Variant report

Variant	rs4927277
Chromosome Location	chr1:56396637-56396638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10888943	0.84[AMR][1000 genomes]
rs10888946	0.82[EUR][1000 genomes]
rs11206685	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206687	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11206688	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11206689	0.82[CEU][hapmap]
rs11583130	0.81[EUR][1000 genomes]
rs12081053	0.83[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12119683	0.86[AFR][1000 genomes]
rs12744110	0.88[AFR][1000 genomes]
rs4468206	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4471303	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4573554	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4926699	0.81[AMR][1000 genomes]
rs4926700	0.86[AMR][1000 genomes]
rs4926701	0.84[AMR][1000 genomes]
rs4926703	0.83[AMR][1000 genomes]
rs4927274	0.88[AFR][1000 genomes]
rs4927275	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4927276	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs6656718	0.83[EUR][1000 genomes]
rs6660000	0.81[EUR][1000 genomes]
rs6665427	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6666177	0.85[AMR][1000 genomes]
rs6666586	0.85[AMR][1000 genomes]
rs6666606	0.80[AMR][1000 genomes]
rs6681658	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6684261	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4927277	YIPF1	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose
2	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
3	chr1:56394400-56397000	Weak transcription	Right Ventricle	heart
4	chr1:56394800-56396800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:56395200-56398000	Enhancers	Ovary	ovary
6	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:56395400-56397200	Enhancers	Right Atrium	heart
8	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:56395800-56396800	Weak transcription	Placenta	Placenta
10	chr1:56395800-56397800	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr1:56396200-56397200	Enhancers	Stomach Smooth Muscle	stomach
12	chr1:56396200-56398600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:56396400-56397600	Enhancers	Brain Germinal Matrix	brain
14	chr1:56396600-56396800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:56396600-56396800	Enhancers	Esophagus	oesophagus
16	chr1:56396600-56397000	Enhancers	Left Ventricle	heart
17	chr1:56396600-56397200	Enhancers	Fetal Muscle Trunk	muscle
18	chr1:56396600-56397200	Enhancers	NHDF-Ad	bronchial
19	chr1:56396600-56397400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:56396600-56397600	Enhancers	Fetal Stomach	stomach
21	chr1:56396600-56398000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:56396600-56398200	Enhancers	Colon Smooth Muscle	Colon
23	chr1:56396600-56398200	Enhancers	Fetal Heart	heart
24	chr1:56396600-56398400	Enhancers	Fetal Lung	lung

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