Variant report

Variant	rs6666606
Chromosome Location	chr1:56339986-56339987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10888943	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10888945	0.81[EUR][1000 genomes]
rs10888946	0.87[EUR][1000 genomes]
rs11206685	0.88[AMR][1000 genomes]
rs11206687	0.88[AMR][1000 genomes]
rs11206688	0.83[AMR][1000 genomes]
rs17113017	0.98[ASN][1000 genomes]
rs17113021	0.99[ASN][1000 genomes]
rs4471303	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4926699	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4926700	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4926701	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4926703	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4927277	0.80[AMR][1000 genomes]
rs6665427	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6666177	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6666586	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6681658	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6684261	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56333800-56340000	Weak transcription	Aorta	Aorta
3	chr1:56334800-56340800	Weak transcription	Psoas Muscle	Psoas
4	chr1:56335200-56342000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:56336600-56342000	Weak transcription	Osteobl	bone
6	chr1:56339200-56342000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:56339200-56342000	Weak transcription	NHDF-Ad	bronchial
8	chr1:56339400-56342000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56339600-56340400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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