Variant report

Variant	rs11206688
Chromosome Location	chr1:56402313-56402314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10888943	0.86[AMR][1000 genomes]
rs11206685	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11206687	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12081053	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4338402	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4471303	0.88[AMR][1000 genomes]
rs4926701	0.86[AMR][1000 genomes]
rs4926703	0.87[AMR][1000 genomes]
rs4927277	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6656718	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6660039	0.80[AMR][1000 genomes]
rs6665427	0.88[AMR][1000 genomes]
rs6666177	0.87[AMR][1000 genomes]
rs6666586	0.87[AMR][1000 genomes]
rs6666606	0.83[AMR][1000 genomes]
rs6681658	0.87[AMR][1000 genomes]
rs6684261	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3374566	chr1:56400589-56402612	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv2614647	chr1:56400766-56402350	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56397200-56403400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr1:56398000-56403400	Weak transcription	Ovary	ovary
3	chr1:56398400-56404000	Weak transcription	Fetal Lung	lung
4	chr1:56398600-56403600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:56402000-56416800	Weak transcription	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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