Variant report

Variant	rs7538008
Chromosome Location	chr1:56396084-56396085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10888945	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11206684	0.96[ASN][1000 genomes]
rs11206686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578335	0.96[ASN][1000 genomes]
rs11583130	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11583537	0.92[ASN][1000 genomes]
rs11590983	0.98[ASN][1000 genomes]
rs11800773	0.96[ASN][1000 genomes]
rs11804906	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062107	0.83[EUR][1000 genomes]
rs12081543	0.96[ASN][1000 genomes]
rs12119683	0.99[EUR][1000 genomes]
rs12119831	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12744110	0.99[EUR][1000 genomes]
rs34631693	0.96[ASN][1000 genomes]
rs41285920	0.98[ASN][1000 genomes]
rs4468206	0.98[EUR][1000 genomes]
rs4550097	0.92[ASN][1000 genomes]
rs4565759	0.96[ASN][1000 genomes]
rs4573554	0.98[EUR][1000 genomes]
rs4927274	0.99[EUR][1000 genomes]
rs4927275	0.98[EUR][1000 genomes]
rs4927276	0.98[EUR][1000 genomes]
rs56686347	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588578	0.96[ASN][1000 genomes]
rs6588581	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6588591	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660000	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6670350	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6684599	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6695436	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6699283	0.92[ASN][1000 genomes]
rs72904468	0.86[EUR][1000 genomes]
rs74072586	0.96[ASN][1000 genomes]
rs74072587	0.96[ASN][1000 genomes]
rs7538057	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56386800-56396600	Weak transcription	Esophagus	oesophagus
2	chr1:56393400-56398000	Enhancers	Adipose Nuclei	Adipose
3	chr1:56393600-56396600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr1:56393800-56398200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:56394400-56397000	Weak transcription	Right Ventricle	heart
6	chr1:56394800-56396600	Weak transcription	Fetal Lung	lung
7	chr1:56394800-56396800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr1:56395000-56396200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:56395000-56396600	Weak transcription	Colon Smooth Muscle	Colon
10	chr1:56395000-56396600	Weak transcription	Fetal Stomach	stomach
11	chr1:56395200-56398000	Enhancers	Ovary	ovary
12	chr1:56395200-56398400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:56395400-56397200	Enhancers	Right Atrium	heart
14	chr1:56395400-56399000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr1:56395800-56396600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:56395800-56396600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr1:56395800-56396800	Weak transcription	Placenta	Placenta
18	chr1:56395800-56397800	Enhancers	Duodenum Smooth Muscle	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links