Variant report

Variant	rs6588578
Chromosome Location	chr1:56379545-56379546
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11206684	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11206686	0.96[ASN][1000 genomes]
rs11576242	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11578335	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11578498	0.80[EUR][1000 genomes]
rs11579038	0.80[EUR][1000 genomes]
rs11581648	0.84[EUR][1000 genomes]
rs11583130	0.96[ASN][1000 genomes]
rs11583537	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11586123	0.80[EUR][1000 genomes]
rs11587235	0.80[EUR][1000 genomes]
rs11589166	0.84[EUR][1000 genomes]
rs11590983	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11800773	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11804906	0.96[ASN][1000 genomes]
rs12081543	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12119831	0.92[ASN][1000 genomes]
rs17112873	0.80[EUR][1000 genomes]
rs17112980	0.80[EUR][1000 genomes]
rs17113009	0.82[EUR][1000 genomes]
rs17113019	0.82[EUR][1000 genomes]
rs34631693	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41285920	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4450055	0.80[EUR][1000 genomes]
rs4550097	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4565759	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4595404	0.82[EUR][1000 genomes]
rs56663249	0.96[EUR][1000 genomes]
rs56686347	0.96[ASN][1000 genomes]
rs57046577	0.84[EUR][1000 genomes]
rs57145918	0.80[EUR][1000 genomes]
rs58221753	0.82[EUR][1000 genomes]
rs59699301	0.84[EUR][1000 genomes]
rs61064012	0.96[EUR][1000 genomes]
rs61497682	0.87[EUR][1000 genomes]
rs6588581	0.96[ASN][1000 genomes]
rs6588591	0.96[ASN][1000 genomes]
rs6660000	0.96[ASN][1000 genomes]
rs6670350	0.96[ASN][1000 genomes]
rs6678002	0.86[EUR][1000 genomes]
rs6684599	0.96[ASN][1000 genomes]
rs6695436	0.92[ASN][1000 genomes]
rs6699283	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74072586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74072587	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7538008	0.96[ASN][1000 genomes]
rs7538057	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818340	chr1:56359741-56408597	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56365200-56382200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56378000-56379600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:56378000-56383200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:56379400-56380200	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links