Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11576242	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11578335	0.82[EUR][1000 genomes]
rs11578498	0.95[EUR][1000 genomes]
rs11579038	0.95[EUR][1000 genomes]
rs11581648	0.98[EUR][1000 genomes]
rs11583537	0.82[EUR][1000 genomes]
rs11586123	0.95[EUR][1000 genomes]
rs11587235	0.95[EUR][1000 genomes]
rs11589166	0.98[EUR][1000 genomes]
rs11590983	0.82[EUR][1000 genomes]
rs11800773	0.82[EUR][1000 genomes]
rs12081543	0.82[EUR][1000 genomes]
rs17112873	0.95[EUR][1000 genomes]
rs17112980	0.95[EUR][1000 genomes]
rs17113002	0.84[AMR][1000 genomes]
rs17113009	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17113017	0.93[AFR][1000 genomes]
rs17113019	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34631693	0.82[EUR][1000 genomes]
rs41285920	0.82[EUR][1000 genomes]
rs4450055	0.95[EUR][1000 genomes]
rs4565759	0.82[EUR][1000 genomes]
rs4595404	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56663249	0.86[EUR][1000 genomes]
rs56794337	0.91[EUR][1000 genomes]
rs57046577	0.98[EUR][1000 genomes]
rs57145918	0.95[EUR][1000 genomes]
rs59699301	0.98[EUR][1000 genomes]
rs61064012	0.86[EUR][1000 genomes]
rs61497682	0.87[EUR][1000 genomes]
rs6588578	0.82[EUR][1000 genomes]
rs6678002	0.89[EUR][1000 genomes]
rs74072534	0.88[AFR][1000 genomes]
rs74072586	0.82[EUR][1000 genomes]
rs74072587	0.82[EUR][1000 genomes]
rs7538057	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56326000-56342000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56333800-56340000	Weak transcription	Aorta	Aorta
3	chr1:56334800-56340800	Weak transcription	Psoas Muscle	Psoas
4	chr1:56335200-56342000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr1:56336200-56339600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr1:56336600-56342000	Weak transcription	Osteobl	bone
7	chr1:56338200-56339600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:56338800-56339400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:56339200-56342000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:56339200-56342000	Weak transcription	NHDF-Ad	bronchial

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