Variant report

Variant	rs11593819
Chromosome Location	chr10:91395731-91395732
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91394085..91396523-chr10:91404909..91406544,2	MCF-7	breast:
2	chr10:91394092..91396583-chr10:91459317..91461130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000232936	Chromatin interaction
ENSG00000249962	Chromatin interaction
ENSG00000235100	Chromatin interaction
ENSG00000152782	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11593892	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594682	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595126	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597847	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598257	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413697	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414269	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414849	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415422	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326195	1.00[ASN][1000 genomes]
rs17484219	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026553	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34354493	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4426060	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56318555	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071258	1.00[ASN][1000 genomes]
rs72818732	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818736	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818740	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818744	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818750	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818751	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818757	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818758	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818759	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818766	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818768	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818770	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818773	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818774	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818781	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818783	0.80[EUR][1000 genomes]
rs72818786	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818790	1.00[ASN][1000 genomes]
rs72818792	1.00[ASN][1000 genomes]
rs728852	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997456	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91351600-91403400	Weak transcription	Esophagus	oesophagus
2	chr10:91352600-91403400	Weak transcription	Small Intestine	intestine
3	chr10:91353800-91403800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:91359800-91403200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:91370200-91403200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:91371800-91401600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:91371800-91403200	Weak transcription	HSMMtube	muscle
8	chr10:91380600-91403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:91383800-91402600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:91385000-91403000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr10:91385400-91403000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:91385600-91402800	Weak transcription	Fetal Muscle Leg	muscle
13	chr10:91385800-91403200	Weak transcription	Fetal Brain Male	brain
14	chr10:91386000-91402800	Weak transcription	NH-A	brain
15	chr10:91386000-91403000	Weak transcription	NHDF-Ad	bronchial
16	chr10:91386000-91403200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr10:91386000-91403200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:91386000-91403200	Weak transcription	Ovary	ovary
19	chr10:91386600-91397000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr10:91386800-91403200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr10:91388200-91396800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr10:91388200-91403400	Weak transcription	Thymus	Thymus
23	chr10:91389600-91402800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:91390600-91399200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:91391000-91398000	Weak transcription	K562	blood
26	chr10:91391400-91401600	Weak transcription	Fetal Lung	lung
27	chr10:91391800-91395800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr10:91391800-91399600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:91392000-91396000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:91392000-91396000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:91392200-91401200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr10:91392200-91402200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr10:91392600-91403000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr10:91392600-91403200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr10:91392600-91403200	Weak transcription	Stomach Smooth Muscle	stomach
36	chr10:91392800-91396000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr10:91392800-91398800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:91392800-91402800	Weak transcription	Primary B cells from cord blood	blood
39	chr10:91393000-91395800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:91393000-91403200	Weak transcription	Fetal Thymus	thymus
41	chr10:91393200-91395800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
42	chr10:91393200-91395800	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr10:91393200-91399200	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr10:91393200-91401600	Weak transcription	Fetal Kidney	kidney
45	chr10:91393400-91396400	Weak transcription	Placenta	Placenta
46	chr10:91393600-91399200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr10:91393800-91395800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr10:91393800-91396800	Weak transcription	Duodenum Mucosa	Duodenum
49	chr10:91393800-91402600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr10:91393800-91402800	Weak transcription	A549	lung

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