Variant report

Variant	rs12413697
Chromosome Location	chr10:91498475-91498476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:91497221..91499554-chr10:91503985..91505731,2	K562	blood:
2	chr10:91480234..91482743-chr10:91496635..91498864,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11593819	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593892	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594682	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598015	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414650	0.87[EUR][1000 genomes]
rs12414849	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415422	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326195	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484219	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34354493	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35059516	1.00[ASN][1000 genomes]
rs4426060	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56318555	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071258	1.00[ASN][1000 genomes]
rs72818732	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818736	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818740	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818744	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818750	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818751	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818757	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818758	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818759	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818766	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818768	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818770	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818773	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818774	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818781	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818783	0.93[EUR][1000 genomes]
rs72818786	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818790	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818792	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728852	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997456	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
5	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:91462200-91505800	Weak transcription	Gastric	stomach
8	chr10:91462200-91505800	Weak transcription	Lung	lung
9	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
16	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
17	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
18	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:91473800-91505800	Weak transcription	Liver	Liver
26	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr10:91476000-91505400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
29	chr10:91476400-91508000	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr10:91476800-91505600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr10:91479200-91505600	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:91479600-91505000	Weak transcription	Fetal Intestine Large	intestine
35	chr10:91479600-91510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
38	chr10:91483200-91523600	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:91484600-91500400	Weak transcription	Thymus	Thymus
40	chr10:91484600-91505600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:91484800-91505600	Weak transcription	Ovary	ovary
42	chr10:91485000-91532600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr10:91486400-91503400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr10:91487000-91504800	Weak transcription	NHEK	skin
45	chr10:91487200-91500000	Weak transcription	Fetal Muscle Leg	muscle
46	chr10:91487200-91505400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr10:91487400-91500200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr10:91487400-91505600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:91487400-91505600	Weak transcription	Brain Germinal Matrix	brain
50	chr10:91487600-91505800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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