Variant report

Variant	rs2026553
Chromosome Location	chr10:91490899-91490900
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:91473623..91477371-chr10:91489479..91493705,4	K562	blood:
2	chr10:91459330..91461363-chr10:91489986..91492698,2	K562	blood:
3	chr10:91474449..91476838-chr10:91488481..91491961,3	K562	blood:

Variant related genes	Relation type
ENSG00000235100	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11593819	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11593892	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11594682	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11595126	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597847	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598015	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12413697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414269	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12414650	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12414849	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12415422	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1326195	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17484219	1.00[CEU][hapmap];0.87[YRI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34354493	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35059516	1.00[ASN][1000 genomes]
rs4426060	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56318555	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7071258	1.00[ASN][1000 genomes]
rs72818732	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818736	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818740	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818744	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818750	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818751	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818757	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818758	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818759	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818766	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818768	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818770	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818773	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818774	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818781	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818783	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72818786	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818790	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72818792	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728852	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs997456	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054572	chr10:91471956-91537070	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91461600-91546600	Weak transcription	Small Intestine	intestine
2	chr10:91461800-91505800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:91462000-91505800	Weak transcription	Left Ventricle	heart
4	chr10:91462200-91505600	Weak transcription	Esophagus	oesophagus
5	chr10:91462200-91505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:91462200-91505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:91462200-91505800	Weak transcription	Gastric	stomach
8	chr10:91462200-91505800	Weak transcription	Lung	lung
9	chr10:91462400-91505600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr10:91463400-91505600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr10:91463400-91505800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:91463400-91521600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr10:91465800-91505600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr10:91466600-91506800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:91467000-91491000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr10:91467200-91505600	Weak transcription	Fetal Brain Female	brain
17	chr10:91467400-91498200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:91467600-91538400	Weak transcription	Fetal Heart	heart
19	chr10:91467800-91507200	Weak transcription	Fetal Brain Male	brain
20	chr10:91468800-91506600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr10:91469200-91505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:91469400-91494800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:91469600-91523600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:91470000-91503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:91470200-91505800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:91470400-91494800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:91472600-91530200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr10:91473600-91505600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr10:91473800-91505800	Weak transcription	Liver	Liver
30	chr10:91474600-91530200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr10:91475000-91494800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr10:91475200-91492000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:91476000-91505400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr10:91476000-91522400	Weak transcription	Placenta	Placenta
35	chr10:91476400-91508000	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr10:91476800-91505600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr10:91477600-91491400	Weak transcription	Adipose Nuclei	Adipose
38	chr10:91478400-91524200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr10:91478400-91542400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr10:91479200-91505600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr10:91479600-91505000	Weak transcription	Fetal Intestine Large	intestine
42	chr10:91479600-91510200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr10:91479600-91522400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr10:91480800-91542200	Weak transcription	Fetal Kidney	kidney
45	chr10:91481400-91495800	Weak transcription	NHLF	lung
46	chr10:91481400-91497200	Weak transcription	Primary B cells from cord blood	blood
47	chr10:91483000-91492000	Strong transcription	Dnd41	blood
48	chr10:91483000-91493000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:91483000-91495000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr10:91483000-91496400	Weak transcription	Right Ventricle	heart

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