Variant report

Variant	rs72818783
Chromosome Location	chr10:91549223-91549224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11593819	0.80[EUR][1000 genomes]
rs11593892	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11594682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11595126	0.84[EUR][1000 genomes]
rs11597847	0.87[EUR][1000 genomes]
rs11598015	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11598257	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12413697	0.93[EUR][1000 genomes]
rs12414269	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12414650	0.83[EUR][1000 genomes]
rs12414849	0.84[EUR][1000 genomes]
rs12415422	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1326195	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17484219	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2026553	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34354493	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4426060	0.84[EUR][1000 genomes]
rs56318555	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7071258	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72818736	0.81[EUR][1000 genomes]
rs72818740	0.83[EUR][1000 genomes]
rs72818744	0.88[EUR][1000 genomes]
rs72818750	0.88[EUR][1000 genomes]
rs72818751	0.88[EUR][1000 genomes]
rs72818757	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72818758	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72818759	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72818766	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72818768	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818770	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818773	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818774	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72818781	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72818786	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72818790	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72818792	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs728852	0.84[EUR][1000 genomes]
rs997456	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046241	chr10:91478562-91614437	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv869080	chr10:91498641-91712834	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1036581	chr10:91526705-91691536	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv948132	chr10:91546180-91550682	Weak transcription Bivalent Enhancer Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
5	esv3337343	chr10:91546722-91549420	Enhancers Weak transcription Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91506600-91554200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:91523000-91549400	Weak transcription	Adipose Nuclei	Adipose
3	chr10:91533200-91554400	Weak transcription	NHEK	skin
4	chr10:91540600-91554200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr10:91540800-91549600	Weak transcription	Lung	lung
6	chr10:91540800-91554000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:91541200-91552000	Weak transcription	HMEC	breast
8	chr10:91541200-91554800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr10:91541400-91550200	Weak transcription	Fetal Intestine Small	intestine
10	chr10:91541400-91560000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:91541600-91552200	Weak transcription	Hela-S3	cervix
12	chr10:91541600-91554000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:91542600-91554000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr10:91544600-91554000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr10:91549000-91549400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
16	chr10:91549000-91549600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr10:91549000-91549600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:91549000-91549800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:91549000-91549800	Enhancers	Fetal Thymus	thymus
20	chr10:91549000-91549800	Enhancers	K562	blood
21	chr10:91549200-91549600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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