Variant report

Variant	rs11604778
Chromosome Location	chr11:57082706-57082707
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57074141..57076695-chr11:57081529..57084399,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10896595	0.81[ASN][1000 genomes]
rs11228968	0.84[ASN][1000 genomes]
rs11228975	0.84[ASN][1000 genomes]
rs11228976	0.84[ASN][1000 genomes]
rs11228978	0.84[ASN][1000 genomes]
rs11228980	0.84[ASN][1000 genomes]
rs11228984	0.84[ASN][1000 genomes]
rs11228985	0.86[ASN][1000 genomes]
rs11604560	0.84[ASN][1000 genomes]
rs11605053	0.86[ASN][1000 genomes]
rs11607817	0.84[ASN][1000 genomes]
rs12421633	0.84[ASN][1000 genomes]
rs12421755	0.84[ASN][1000 genomes]
rs12792781	0.84[ASN][1000 genomes]
rs12797769	0.85[ASN][1000 genomes]
rs17572970	0.84[ASN][1000 genomes]
rs17651610	0.84[ASN][1000 genomes]
rs17652078	0.84[ASN][1000 genomes]
rs1892963	0.84[ASN][1000 genomes]
rs1939489	0.86[ASN][1000 genomes]
rs1939495	0.84[ASN][1000 genomes]
rs2155230	0.84[ASN][1000 genomes]
rs2226613	0.85[ASN][1000 genomes]
rs35610294	0.82[ASN][1000 genomes]
rs3935068	0.86[ASN][1000 genomes]
rs4384399	0.84[ASN][1000 genomes]
rs4565915	0.84[ASN][1000 genomes]
rs4938855	0.84[ASN][1000 genomes]
rs4938857	0.84[ASN][1000 genomes]
rs4938859	0.83[ASN][1000 genomes]
rs4938861	0.84[ASN][1000 genomes]
rs4939132	0.85[ASN][1000 genomes]
rs58295319	0.80[ASN][1000 genomes]
rs6591413	0.84[ASN][1000 genomes]
rs6591415	0.84[ASN][1000 genomes]
rs6591416	0.84[ASN][1000 genomes]
rs6591417	0.84[ASN][1000 genomes]
rs7102963	0.84[ASN][1000 genomes]
rs7120644	0.84[ASN][1000 genomes]
rs7128371	0.84[ASN][1000 genomes]
rs7130252	0.84[ASN][1000 genomes]
rs72921992	0.87[ASN][1000 genomes]
rs7935236	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
4	nsv541048	chr11:57076815-57120781	Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57079200-57091400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:57079400-57089600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:57079400-57091400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:57079600-57082800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:57079600-57082800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:57079600-57083400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:57079600-57083400	Weak transcription	Fetal Brain Male	brain
8	chr11:57079600-57084200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:57079600-57084400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr11:57079600-57084600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:57079600-57084600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr11:57079600-57084800	Genic enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:57079600-57085200	Genic enhancers	Fetal Muscle Trunk	muscle
14	chr11:57079600-57086400	Genic enhancers	Gastric	stomach
15	chr11:57079600-57089400	Weak transcription	GM12878-XiMat	blood
16	chr11:57079600-57090800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:57079800-57082800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:57079800-57082800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:57079800-57082800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:57079800-57083200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
21	chr11:57079800-57083600	Genic enhancers	Adipose Nuclei	Adipose
22	chr11:57079800-57084200	Genic enhancers	H1 Cell Line	embryonic stem cell
23	chr11:57079800-57084600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr11:57079800-57084800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:57079800-57085400	Strong transcription	Aorta	Aorta
26	chr11:57079800-57085400	Strong transcription	Fetal Brain Female	brain
27	chr11:57079800-57085600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
28	chr11:57079800-57086200	Genic enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:57079800-57087400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr11:57079800-57088200	Genic enhancers	Pancreas	Pancrea
31	chr11:57079800-57089000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr11:57079800-57089400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:57079800-57090400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:57080000-57083200	Strong transcription	K562	blood
35	chr11:57080000-57083800	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr11:57080000-57083800	Strong transcription	Brain Cingulate Gyrus	brain
37	chr11:57080000-57084200	Strong transcription	Rectal Smooth Muscle	rectum
38	chr11:57080000-57085400	Strong transcription	Brain Germinal Matrix	brain
39	chr11:57080000-57085400	Strong transcription	Brain Substantia Nigra	brain
40	chr11:57080000-57085600	Strong transcription	A549	lung
41	chr11:57080000-57085600	Strong transcription	Osteobl	bone
42	chr11:57080000-57088200	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:57080200-57083000	Strong transcription	Right Ventricle	heart
44	chr11:57080200-57088800	Strong transcription	Dnd41	blood
45	chr11:57080400-57082800	Strong transcription	Brain Hippocampus Middle	brain
46	chr11:57080400-57082800	Strong transcription	NHLF	lung
47	chr11:57080400-57083000	Strong transcription	Brain Inferior Temporal Lobe	brain
48	chr11:57080400-57083000	Strong transcription	Lung	lung
49	chr11:57080400-57083200	Strong transcription	HSMMtube	muscle
50	chr11:57080400-57083400	Strong transcription	Colon Smooth Muscle	Colon

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