Variant report

Variant	rs11634820
Chromosome Location	chr15:73980719-73980720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73935857..73937490-chr15:73980452..73983279,2	MCF-7	breast:
2	chr15:73976422..73978355-chr15:73979433..73980965,2	K562	blood:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156642	Chromatin interaction
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11072435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11632314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12595823	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34696288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55743544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56079161	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56341782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58035582	0.86[AFR][1000 genomes]
rs8024103	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73977800-73981800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:73977800-73982400	Enhancers	Lung	lung
3	chr15:73978000-73981000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:73978000-73981400	Enhancers	Spleen	Spleen
5	chr15:73978200-73982200	Enhancers	Liver	Liver
6	chr15:73978200-73982200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:73978200-73982400	Enhancers	Ovary	ovary
8	chr15:73978400-73981000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr15:73978400-73981000	Enhancers	Brain Hippocampus Middle	brain
10	chr15:73978400-73981600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73978400-73981600	Enhancers	Right Ventricle	heart
12	chr15:73978400-73982600	Enhancers	HUVEC	blood vessel
13	chr15:73978600-73981000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:73978600-73981400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:73978600-73981600	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr15:73978600-73982200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:73978600-73982200	Enhancers	Colon Smooth Muscle	Colon
18	chr15:73978600-73982200	Enhancers	Placenta	Placenta
19	chr15:73978600-73982400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:73978600-73983600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:73978800-73981200	Weak transcription	Stomach Mucosa	stomach
22	chr15:73978800-73981600	Enhancers	Fetal Brain Male	brain
23	chr15:73978800-73981600	Enhancers	Left Ventricle	heart
24	chr15:73978800-73982000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:73978800-73983600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr15:73978800-73983600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr15:73978800-73983800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr15:73978800-73983800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:73978800-73989000	Weak transcription	Fetal Kidney	kidney
30	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr15:73979000-73981400	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr15:73979000-73981600	Enhancers	Right Atrium	heart
33	chr15:73979000-73981800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:73979000-73982000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:73979000-73982000	Enhancers	Fetal Muscle Leg	muscle
36	chr15:73979000-73982000	Enhancers	HepG2	liver
37	chr15:73979000-73982400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr15:73979000-73982800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:73979000-73985400	Enhancers	Adipose Nuclei	Adipose
40	chr15:73979200-73981000	Enhancers	Fetal Brain Female	brain
41	chr15:73979200-73981800	Enhancers	NHLF	lung
42	chr15:73979200-73982200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:73979200-73982400	Enhancers	HSMMtube	muscle
44	chr15:73979200-73983400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr15:73979200-73983800	Weak transcription	Colonic Mucosa	Colon
46	chr15:73979200-73985000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:73979400-73981800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:73979400-73981800	Enhancers	Brain Germinal Matrix	brain
49	chr15:73979400-73983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr15:73979400-73983800	Enhancers	NHEK	skin

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