Variant report

Variant	rs8024103
Chromosome Location	chr15:74009564-74009565
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11072426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11072435	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11574481	1.00[MEX][hapmap]
rs11632314	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11633108	0.88[ASN][1000 genomes]
rs11634820	0.91[ASN][1000 genomes]
rs12594091	0.88[ASN][1000 genomes]
rs12595823	0.97[ASN][1000 genomes]
rs12902790	1.00[MEX][hapmap]
rs16958010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16958014	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34696288	0.94[ASN][1000 genomes]
rs55743544	0.83[ASN][1000 genomes]
rs56079161	0.88[ASN][1000 genomes]
rs56341782	0.94[ASN][1000 genomes]
rs7168736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7178358	1.00[MEX][hapmap]
rs7402796	1.00[CEU][hapmap]
rs744617	1.00[MEX][hapmap]
rs8027445	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73990000-74012000	Weak transcription	Fetal Brain Male	brain
2	chr15:73990600-74018800	Weak transcription	Right Atrium	heart
3	chr15:74003200-74015400	Weak transcription	Fetal Kidney	kidney
4	chr15:74004000-74010000	Weak transcription	Brain Angular Gyrus	brain
5	chr15:74004000-74015400	Weak transcription	Fetal Lung	lung
6	chr15:74004200-74009800	Weak transcription	NHDF-Ad	bronchial
7	chr15:74004200-74011800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:74005800-74010800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:74006000-74011400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:74006200-74011600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr15:74006200-74015800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:74006400-74012400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:74006600-74011800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:74006600-74012600	Weak transcription	Brain Hippocampus Middle	brain
15	chr15:74006600-74015000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr15:74006600-74015000	Weak transcription	Brain Anterior Caudate	brain
17	chr15:74006600-74015600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr15:74006600-74016600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr15:74006600-74016600	Weak transcription	Gastric	stomach
20	chr15:74006600-74016600	Weak transcription	Spleen	Spleen
21	chr15:74006800-74012200	Weak transcription	Right Ventricle	heart
22	chr15:74007000-74010400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr15:74007000-74010600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:74007200-74009600	Weak transcription	HSMMtube	muscle
25	chr15:74007200-74009600	Weak transcription	Osteobl	bone
26	chr15:74007200-74010600	Weak transcription	Fetal Intestine Large	intestine
27	chr15:74007200-74010800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:74007200-74011000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr15:74007200-74011200	Weak transcription	Brain Germinal Matrix	brain
30	chr15:74007200-74016600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:74007400-74009600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:74007400-74009600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:74007400-74009600	Weak transcription	HSMM	muscle
34	chr15:74007400-74009800	Weak transcription	Adipose Nuclei	Adipose
35	chr15:74007400-74009800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr15:74007400-74010400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:74007400-74010600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr15:74007400-74011000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr15:74007400-74011200	Enhancers	Fetal Heart	heart
40	chr15:74007400-74011400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr15:74007400-74012200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr15:74007400-74015200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr15:74007400-74031400	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr15:74007600-74009600	Weak transcription	Fetal Intestine Small	intestine
45	chr15:74007600-74009800	Weak transcription	Fetal Brain Female	brain
46	chr15:74007600-74009800	Weak transcription	Fetal Stomach	stomach
47	chr15:74007600-74009800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:74007600-74015800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:74007800-74012400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:74008200-74010200	Enhancers	Skeletal Muscle Male	skeletal muscle

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