Variant report

Variant	rs12594091
Chromosome Location	chr15:73972979-73972980
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11072435	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11072441	1.00[YRI][hapmap]
rs11072442	1.00[YRI][hapmap]
rs11632314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11633108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12595823	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1452378	1.00[CHB][hapmap]
rs34696288	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55743544	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56079161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56341782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58035582	0.86[AFR][1000 genomes]
rs7178269	0.82[ASN][1000 genomes]
rs8024103	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73969800-73974000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr15:73970000-73973600	Weak transcription	Spleen	Spleen
3	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
4	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
5	chr15:73970200-73974800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:73970200-73974800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:73971000-73974800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr15:73971400-73973600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr15:73972000-73973800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:73972400-73973800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:73972600-73973400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:73972600-73973600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:73972600-73974800	Weak transcription	Adipose Nuclei	Adipose
18	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:73972800-73973800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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