Variant report

Variant	rs56341782
Chromosome Location	chr15:73990637-73990638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr15:73990560-73990638	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11072435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11632314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11633108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11634820	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12594091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12595823	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34696288	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55743544	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56079161	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8024103	0.94[ASN][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73978800-74000800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:73979400-73996400	Weak transcription	A549	lung
3	chr15:73981800-73995000	Weak transcription	Pancreas	Pancrea
4	chr15:73984600-73992000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73984600-73995400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:73985400-73993600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:73986800-73992200	Weak transcription	HepG2	liver
8	chr15:73987000-73990800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:73988000-73990800	Enhancers	Primary hematopoietic stem cells	blood
10	chr15:73988200-73991800	Enhancers	HSMMtube	muscle
11	chr15:73988600-73992400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:73988800-73990800	Enhancers	GM12878-XiMat	blood
13	chr15:73988800-73996200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:73989000-73990800	Enhancers	Brain Substantia Nigra	brain
15	chr15:73989000-73990800	Enhancers	Dnd41	blood
16	chr15:73989000-73991000	Enhancers	Brain Hippocampus Middle	brain
17	chr15:73989400-73990800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr15:73989400-73991800	Weak transcription	Brain Anterior Caudate	brain
19	chr15:73989400-73991800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:73989400-73994200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr15:73989600-73990800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr15:73989600-73991000	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr15:73989600-73991400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:73989600-73991600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:73989600-73992400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr15:73989600-73992400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr15:73989600-73994200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:73989600-73994800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:73989600-73996200	Weak transcription	Duodenum Mucosa	Duodenum
30	chr15:73989600-73996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr15:73989800-73991400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:73989800-73991400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:73989800-73991400	Weak transcription	Liver	Liver
34	chr15:73989800-73991400	Weak transcription	Fetal Heart	heart
35	chr15:73989800-73991800	Weak transcription	Brain Angular Gyrus	brain
36	chr15:73989800-73991800	Weak transcription	Right Ventricle	heart
37	chr15:73989800-73992200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr15:73989800-73994600	Weak transcription	Gastric	stomach
39	chr15:73989800-73994800	Weak transcription	Colonic Mucosa	Colon
40	chr15:73989800-73995000	Weak transcription	Lung	lung
41	chr15:73989800-73995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:73989800-73995800	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr15:73989800-73996400	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr15:73989800-73996800	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:73989800-73997000	Weak transcription	Hela-S3	cervix
46	chr15:73989800-74000600	Weak transcription	Esophagus	oesophagus
47	chr15:73989800-74001600	Strong transcription	Fetal Intestine Small	intestine
48	chr15:73989800-74008800	Weak transcription	Small Intestine	intestine
49	chr15:73990000-73991600	Genic enhancers	NHEK	skin
50	chr15:73990000-73992200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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