Variant report

Variant	rs1167390
Chromosome Location	chr7:65575893-65575894
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:65575856-65576246	HCT-116	colon:	n/a	n/a
2	MAX	chr7:65575734-65576184	ECC-1	luminal epithelium:	n/a	n/a
3	MAX	chr7:65575867-65575985	HepG2	liver:	n/a	n/a
4	MAX	chr7:65575652-65576428	HCT-116	colon:	n/a	n/a
5	FOSL1	chr7:65575710-65576481	HCT-116	colon:	n/a	n/a
6	SP1	chr7:65575664-65576555	HCT-116	colon:	n/a	n/a
7	JUND	chr7:65575642-65576498	HCT-116	colon:	n/a	n/a
8	SIN3AK20	chr7:65575752-65576305	SK-N-SH	brain:	n/a	n/a
9	TCF12	chr7:65575690-65576537	SK-N-SH	brain:	n/a	chr7:65576232-65576239 chr7:65576230-65576240
10	MAX	chr7:65575735-65576127	K562	blood:	n/a	n/a
11	POLR2A	chr7:65575682-65576542	U87	brain:	n/a	n/a
12	PBX3	chr7:65575648-65576492	SK-N-SH	brain:	n/a	n/a
13	POLR2A	chr7:65575820-65576321	U87	brain:	n/a	n/a
14	CBX3	chr7:65575774-65576206	K562	blood:	n/a	n/a
15	EP300	chr7:65575771-65576250	SK-N-SH_RA	brain:	n/a	n/a
16	TCF12	chr7:65575693-65576561	SK-N-SH	brain:	n/a	chr7:65576232-65576239 chr7:65576230-65576240
17	FOS	chr7:65575858-65576253	MCF10A-Er-Src	breast:	n/a	n/a
18	EP300	chr7:65575758-65576218	SK-N-SH_RA	brain:	n/a	n/a
19	MAX	chr7:65575712-65576244	A549	lung:	n/a	n/a
20	EP300	chr7:65575658-65576456	SK-N-SH	brain:	n/a	n/a
21	E2F6	chr7:65575732-65576241	A549	lung:	n/a	n/a
22	FOSL2	chr7:65575649-65576524	SK-N-SH	brain:	n/a	n/a
23	E2F4	chr7:65575852-65576158	MCF10A-Er-Src	breast:	n/a	n/a
24	SP1	chr7:65575645-65576555	HCT-116	colon:	n/a	n/a
25	E2F6	chr7:65575836-65576077	K562	blood:	n/a	n/a
26	FOSL2	chr7:65575738-65576389	SK-N-SH	brain:	n/a	n/a
27	MAX	chr7:65575850-65576080	K562	blood:	n/a	n/a
28	POLR2A	chr7:65575676-65576575	U87	brain:	n/a	n/a
29	JUND	chr7:65575715-65576497	SK-N-SH	brain:	n/a	n/a
30	MAX	chr7:65575679-65576406	SK-N-SH	brain:	n/a	n/a
31	FOS	chr7:65575816-65576338	MCF10A-Er-Src	breast:	n/a	n/a
32	POLR2A	chr7:65575722-65576341	SK-N-SH	brain:	n/a	n/a
33	FOSL2	chr7:65575771-65576344	A549	lung:	n/a	n/a
34	MAX	chr7:65575260-65576501	HCT-116	colon:	n/a	n/a
35	MYC	chr7:65575830-65576229	MCF10A-Er-Src	breast:	n/a	n/a
36	TCF7L2	chr7:65575793-65576272	PANC-1	pancreas:	n/a	chr7:65575939-65575948 chr7:65575941-65575948
37	RAD21	chr7:65575818-65576225	SK-N-SH_RA	brain:	n/a	n/a
38	MAFK	chr7:65575824-65576228	IMR90	lung:	n/a	n/a
39	POLR2A	chr7:65575775-65576340	HCT-116	colon:	n/a	n/a
40	FOS	chr7:65575822-65576257	MCF10A-Er-Src	breast:	n/a	n/a
41	STAT3	chr7:65575828-65576120	MCF10A-Er-Src	breast:	n/a	chr7:65575988-65576000
42	TCF7L2	chr7:65575777-65576181	Hela-S3	cervix:	n/a	chr7:65575939-65575948 chr7:65575941-65575948
43	POLR2A	chr7:65575846-65576343	HUVEC	blood vessel:	n/a	n/a
44	MAX	chr7:65575698-65576395	A549	lung:	n/a	n/a
45	GATA3	chr7:65575724-65576499	SK-N-SH	brain:	n/a	n/a
46	FOSL1	chr7:65575686-65576499	HCT-116	colon:	n/a	n/a
47	PBX3	chr7:65575706-65576416	SK-N-SH	brain:	n/a	n/a
48	TCF7L2	chr7:65575727-65576182	HCT-116	colon:	n/a	chr7:65575939-65575948 chr7:65575941-65575948
49	MYC	chr7:65575807-65576233	MCF10A-Er-Src	breast:	n/a	n/a
50	MAX	chr7:65575865-65576075	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:65575320..65577693-chr7:65578338..65580316,4	MCF-7	breast:
2	chr7:65574884..65578187-chr7:65578313..65581655,5	K562	blood:
3	chr7:65574035..65576249-chr7:65590023..65592857,2	MCF-7	breast:

Variant related genes	Relation type
CRCP	TF binding region
ENSG00000241258	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10215948	0.89[CEU][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap]
rs10224872	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs10240249	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10250544	0.95[GIH][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];0.94[YRI][hapmap]
rs10253922	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10256544	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs10257427	0.88[CEU][hapmap]
rs10260426	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs10261398	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs10267430	0.88[CEU][hapmap]
rs10268656	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10271553	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10282433	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs1129531	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1167399	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1167406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1167408	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1167612	0.83[AMR][1000 genomes]
rs11760844	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs1183245	0.89[CEU][hapmap]
rs11971949	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11974264	0.83[AFR][1000 genomes]
rs11984115	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs12537823	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs13240492	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13242721	0.85[AFR][1000 genomes]
rs13245728	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs13309935	0.88[AMR][1000 genomes]
rs1540651	0.82[AFR][1000 genomes]
rs1612452	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1875057	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs1976200	1.00[YRI][hapmap];0.99[AFR][1000 genomes]
rs1983372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2087647	0.92[CEU][hapmap];0.82[CHB][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2173570	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs2220626	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs2249458	0.96[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2420168	0.83[AMR][1000 genomes]
rs2420173	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2420174	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460430	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2460432	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28391294	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28470208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901152	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs2949696	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs313829	0.83[YRI][hapmap]
rs34550048	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35034167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4149461	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs4236208	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs4368860	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4612218	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4718319	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4718330	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs55962648	0.85[AMR][1000 genomes]
rs57866200	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59466412	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467451	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6460282	1.00[CEU][hapmap];0.87[GIH][hapmap];0.83[LWK][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs6944374	0.96[CEU][hapmap];0.98[GIH][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6945843	0.92[CEU][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap]
rs6946143	0.89[CEU][hapmap];0.83[GIH][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6951503	0.96[CEU][hapmap]
rs6951787	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6952182	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6957690	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6958484	0.88[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes]
rs6960446	1.00[CEU][hapmap];0.93[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6961717	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6963646	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs6964437	1.00[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap]
rs6967708	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6971509	0.89[CEU][hapmap];0.82[CHB][hapmap];0.89[GIH][hapmap];0.86[LWK][hapmap];0.87[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs6974614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap]
rs697968	0.89[CEU][hapmap]
rs697970	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs709608	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs709609	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7782806	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7786892	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7798630	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs7801282	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs7809814	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs780998	0.81[AMR][1000 genomes]
rs875971	0.89[CEU][hapmap];0.82[CHB][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes]
rs880166	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs908915	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs949930	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9767916	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv888325	chr7:65474919-65575893	Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs1167390	RNU6-96P	cis	Thyroid	GTEx
rs1167390	KCTD7	cis	parietal	SCAN
rs1167390	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs1167390	CRCP	cis	parietal	SCAN
rs1167390	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs1167390	CRCP	cis	cerebellum	SCAN
rs1167390	LINC00174	cis	Thyroid	GTEx
rs1167390	RP4-756H11.3	cis	lung	GTEx
rs1167390	GS1-124K5.2	cis	Whole Blood	GTEx
rs1167390	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs1167390	GUSB	cis	cerebellum	SCAN
rs1167390	RP4-756H11.3	cis	Thyroid	GTEx
rs1167390	RABGEF1	cis	cerebellum	SCAN
rs1167390	GUSB	cis	parietal	SCAN
rs1167390	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs1167390	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs1167390	ASL	cis	cerebellum	SCAN
rs1167390	RP4-756H11.3	cis	Artery Tibial	GTEx
rs1167390	GS1-124K5.11	cis	Thyroid	GTEx
rs1167390	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx
rs1167390	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs1167390	GTF2IRD1P1	cis	Thyroid	GTEx
rs1167390	RABGEF1	cis	parietal	SCAN
rs1167390	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs1167390	TPST1	cis	lymphoblastoid	seeQTL
rs1167390	GS1-124K5.4	cis	Stomach	GTEx
rs1167390	ZNF117	cis	parietal	SCAN
rs1167390	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65565200-65579800	Weak transcription	Spleen	Spleen
2	chr7:65565600-65579200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:65565800-65579000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:65565800-65579000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:65565800-65579000	Weak transcription	Fetal Stomach	stomach
6	chr7:65565800-65579400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:65566000-65579000	Weak transcription	Primary T cells from cord blood	blood
8	chr7:65566200-65579000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr7:65566200-65579000	Weak transcription	Brain Substantia Nigra	brain
10	chr7:65566200-65579000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:65566200-65579200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:65571800-65576000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:65572000-65579000	Weak transcription	Brain Angular Gyrus	brain
14	chr7:65572600-65576200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:65573000-65579400	Weak transcription	HSMMtube	muscle
16	chr7:65573800-65578800	Weak transcription	Hela-S3	cervix
17	chr7:65573800-65578800	Weak transcription	HepG2	liver
18	chr7:65574200-65579400	Weak transcription	Fetal Brain Female	brain
19	chr7:65574600-65579400	Weak transcription	Left Ventricle	heart
20	chr7:65575000-65576600	Strong transcription	Fetal Intestine Small	intestine
21	chr7:65575200-65576200	Strong transcription	Liver	Liver
22	chr7:65575200-65576800	Enhancers	NHDF-Ad	bronchial
23	chr7:65575400-65576800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr7:65575400-65576800	Enhancers	HSMM	muscle
25	chr7:65575400-65579400	Weak transcription	Stomach Mucosa	stomach
26	chr7:65575600-65576000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:65575600-65576600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:65575600-65576800	Enhancers	NHEK	skin
29	chr7:65575600-65577000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr7:65575600-65577600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:65575600-65578800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr7:65575800-65576400	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr7:65575800-65576400	Enhancers	A549	lung
34	chr7:65575800-65576400	Enhancers	K562	blood
35	chr7:65575800-65576600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr7:65575800-65576600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:65575800-65576600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr7:65575800-65576600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr7:65575800-65576600	Enhancers	Placenta Amnion	Placenta Amnion
40	chr7:65575800-65576600	Enhancers	HMEC	breast
41	chr7:65575800-65576800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:65575800-65576800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:65575800-65576800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:65575800-65576800	Enhancers	NH-A	brain
45	chr7:65575800-65576800	Enhancers	NHLF	lung
46	chr7:65575800-65576800	Enhancers	Osteobl	bone

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