Variant report

Variant	rs10282433
Chromosome Location	chr7:65721439-65721440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65719328..65723355-chr7:65725025..65727882,3	K562	blood:

Extended variants
information (count: 167 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:163)

rs_ID	r²[population]
rs1000464	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1002053	0.84[CEU][hapmap];0.83[CHB][hapmap]
rs10215948	0.89[CEU][hapmap];0.83[CHB][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10224872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10228885	1.00[CEU][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10240249	0.81[EUR][1000 genomes]
rs10240949	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10250544	0.95[GIH][hapmap];0.89[LWK][hapmap];0.86[MKK][hapmap];0.84[TSI][hapmap];0.94[YRI][hapmap];0.93[EUR][1000 genomes]
rs10255397	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10256544	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10257427	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10257911	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10260426	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10261398	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10263690	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10267430	0.88[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs10272149	0.84[EUR][1000 genomes]
rs10276077	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10447522	1.00[CEU][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10807704	0.85[EUR][1000 genomes]
rs1083554	0.87[EUR][1000 genomes]
rs10950033	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1129531	1.00[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1167390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs1167406	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11760844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11764589	0.86[EUR][1000 genomes]
rs11765965	0.82[CEU][hapmap]
rs11769079	0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1183245	0.89[CEU][hapmap]
rs11984115	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12531677	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12534500	0.90[EUR][1000 genomes]
rs12537823	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12698520	0.88[CEU][hapmap];0.83[CHB][hapmap]
rs13225672	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13227219	0.85[CHB][hapmap]
rs13230545	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13245728	1.00[YRI][hapmap]
rs13309935	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1532571	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1616988	0.89[YRI][hapmap]
rs1643375	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1695820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs1875057	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1968225	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs1976200	1.00[YRI][hapmap]
rs1983372	1.00[CEU][hapmap]
rs2036263	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036264	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs2077593	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs2087647	0.92[CEU][hapmap]
rs2088653	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.93[EUR][1000 genomes]
rs2088655	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2173570	0.89[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2220626	0.92[CEU][hapmap]
rs2249458	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs2420173	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2420174	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2420608	0.84[EUR][1000 genomes]
rs28391294	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28491091	0.91[EUR][1000 genomes]
rs2901152	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2901155	0.85[EUR][1000 genomes]
rs2909688	0.91[EUR][1000 genomes]
rs313829	0.83[YRI][hapmap]
rs34913718	0.86[EUR][1000 genomes]
rs3893216	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3935391	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4078376	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4149461	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4236208	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4587224	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4623294	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4718319	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4718324	0.87[EUR][1000 genomes]
rs4718328	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4718329	0.88[EUR][1000 genomes]
rs4718330	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55748098	0.80[AMR][1000 genomes]
rs6460278	0.91[EUR][1000 genomes]
rs6460279	0.91[EUR][1000 genomes]
rs6460282	1.00[CEU][hapmap];0.87[GIH][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6460284	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6460287	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6460290	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6460292	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap]
rs6460293	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.93[EUR][1000 genomes]
rs6460296	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs6460301	0.81[EUR][1000 genomes]
rs6460302	0.83[EUR][1000 genomes]
rs6944374	0.96[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6945843	0.92[CEU][hapmap];0.82[CHB][hapmap];0.80[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes]
rs6946143	0.89[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs6947339	1.00[CEU][hapmap];0.93[GIH][hapmap];0.86[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap]
rs6951503	0.96[CEU][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6952182	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6952473	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6956179	0.89[CEU][hapmap];0.83[CHB][hapmap];0.80[MEX][hapmap];0.89[TSI][hapmap]
rs6958294	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6958484	0.88[CEU][hapmap];0.83[GIH][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs6959268	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6960446	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6961717	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs6962717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[EUR][1000 genomes]
rs6963228	0.84[EUR][1000 genomes]
rs6963646	0.89[CEU][hapmap];0.83[GIH][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap]
rs6964437	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6967708	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6971509	0.89[CEU][hapmap];0.89[GIH][hapmap];0.93[LWK][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6971752	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6974614	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6976714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6977501	0.87[AFR][1000 genomes]
rs6978028	0.85[EUR][1000 genomes]
rs6979452	0.93[EUR][1000 genomes]
rs697968	0.89[CEU][hapmap]
rs697970	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs6980451	0.82[EUR][1000 genomes]
rs709595	0.89[CEU][hapmap];0.83[CHB][hapmap]
rs709596	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs709609	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs71526537	0.85[EUR][1000 genomes]
rs7778322	0.85[EUR][1000 genomes]
rs7781880	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7782704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7782806	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7783613	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap]
rs7783779	1.00[CEU][hapmap];0.93[GIH][hapmap];0.89[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778680	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs778684	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs778686	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7786892	0.82[EUR][1000 genomes]
rs778690	0.85[EUR][1000 genomes]
rs778697	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs778702	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778703	0.87[EUR][1000 genomes]
rs778705	0.86[EUR][1000 genomes]
rs778706	0.89[CEU][hapmap]
rs778707	0.86[EUR][1000 genomes]
rs778711	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs778715	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778716	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778719	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs778720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778722	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs778724	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs778728	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs778734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs778736	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs7787482	0.87[EUR][1000 genomes]
rs7789615	0.83[EUR][1000 genomes]
rs7794930	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7796162	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7798630	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7801282	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs809025	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs875971	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs880166	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs908915	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs937495	0.89[CEU][hapmap];0.83[CHB][hapmap];0.84[GIH][hapmap];0.93[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs949930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9969301	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs10282433	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs10282433	LINC00174	cis	Thyroid	GTEx
rs10282433	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs10282433	CRCP	cis	cerebellum	SCAN
rs10282433	GS1-124K5.4	cis	Stomach	GTEx
rs10282433	GUSB	cis	parietal	SCAN
rs10282433	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs10282433	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs10282433	CRCP	cis	parietal	SCAN
rs10282433	GTF2IRD1P1	cis	Thyroid	GTEx
rs10282433	RABGEF1	cis	cerebellum	SCAN
rs10282433	ZNF117	cis	parietal	SCAN
rs10282433	TPST1	cis	lymphoblastoid	seeQTL
rs10282433	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx
rs10282433	RP4-756H11.3	cis	Artery Tibial	GTEx
rs10282433	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs10282433	RABGEF1	cis	parietal	SCAN
rs10282433	GUSB	cis	cerebellum	SCAN
rs10282433	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs10282433	RNU6-96P	cis	Thyroid	GTEx
rs10282433	RP4-756H11.3	cis	Thyroid	GTEx
rs10282433	ASL	cis	cerebellum	SCAN
rs10282433	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs10282433	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs10282433	GS1-124K5.2	cis	Whole Blood	GTEx
rs10282433	KCTD7	cis	parietal	SCAN
rs10282433	RP4-756H11.3	cis	lung	GTEx
rs10282433	GS1-124K5.11	cis	Thyroid	GTEx

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
2	chr7:65701600-65729200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr7:65702400-65723600	Weak transcription	Gastric	stomach
4	chr7:65704000-65726800	Weak transcription	HSMM	muscle
5	chr7:65704200-65729200	Weak transcription	Aorta	Aorta
6	chr7:65704200-65731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:65704400-65721800	Weak transcription	Fetal Intestine Small	intestine
8	chr7:65704400-65746800	Weak transcription	Pancreas	Pancrea
9	chr7:65705800-65729200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:65709800-65723400	Weak transcription	Ovary	ovary
11	chr7:65711800-65723200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:65711800-65723200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:65712800-65721800	Weak transcription	Left Ventricle	heart
14	chr7:65712800-65729200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:65715200-65723200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:65715600-65722400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:65716200-65723600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:65718000-65723200	Weak transcription	Brain Anterior Caudate	brain
19	chr7:65718600-65723200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr7:65719400-65722200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr7:65719800-65723400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr7:65719800-65730400	Weak transcription	Right Ventricle	heart
23	chr7:65720000-65721600	Enhancers	Osteobl	bone
24	chr7:65720200-65721800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:65720400-65721600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:65720400-65721800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:65720600-65721600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:65720800-65721600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr7:65720800-65723200	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:65720800-65723200	Weak transcription	NHDF-Ad	bronchial
31	chr7:65720800-65723800	Enhancers	Muscle Satellite Cultured Cells	--
32	chr7:65720800-65725800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr7:65721000-65723200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:65721200-65721800	Strong transcription	Liver	Liver
35	chr7:65721200-65722000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:65721200-65722000	ZNF genes & repeats	NHEK	skin
37	chr7:65721200-65722600	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr7:65721200-65723400	Weak transcription	NH-A	brain
39	chr7:65721200-65728400	Weak transcription	Fetal Lung	lung
40	chr7:65721400-65721600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:65721400-65721800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:65721400-65722000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr7:65721400-65722000	Genic enhancers	HepG2	liver
44	chr7:65721400-65722200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:65721400-65722200	ZNF genes & repeats	HMEC	breast
46	chr7:65721400-65722400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:65721400-65722800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr7:65721400-65728800	Weak transcription	NHLF	lung

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