Variant report

Variant	rs778736
Chromosome Location	chr7:65813848-65813849
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:65813833-65814146	MCF10A-Er-Src	breast:	n/a	n/a
2	TCF12	chr7:65813457-65813987	SK-N-SH	brain:	n/a	n/a
3	MAFF	chr7:65813577-65813887	HepG2	liver:	n/a	n/a
4	MYC	chr7:65813720-65814267	NB4	blood:	n/a	n/a
5	MAFK	chr7:65813541-65813878	HepG2	liver:	n/a	n/a
6	MAFK	chr7:65813563-65813862	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
TPST1	TF binding region

Extended variants
information (count: 158 )
Associated
traits (count: 31 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs1000464	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1002053	0.84[CEU][hapmap]
rs10215948	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs10224872	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10228885	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240949	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10250544	0.89[ASW][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255397	0.91[EUR][1000 genomes]
rs10256544	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.91[EUR][1000 genomes]
rs10257427	0.88[CEU][hapmap]
rs10257911	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10260426	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10261398	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10263690	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10267430	0.88[CEU][hapmap]
rs10276077	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10282433	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs10447522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10807704	0.82[EUR][1000 genomes]
rs1083554	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10950029	0.82[YRI][hapmap]
rs10950033	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1129531	0.93[GIH][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs11760844	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11764589	0.83[EUR][1000 genomes]
rs11765791	0.86[EUR][1000 genomes]
rs11765965	0.82[CEU][hapmap]
rs11769079	0.93[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11984115	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12531677	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532998	0.89[CEU][hapmap];0.87[TSI][hapmap]
rs12534500	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12537823	1.00[CEU][hapmap];0.98[GIH][hapmap];0.89[LWK][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.93[EUR][1000 genomes]
rs12668005	0.85[EUR][1000 genomes]
rs12673450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs12698520	0.88[CEU][hapmap]
rs12698522	0.83[EUR][1000 genomes]
rs12698526	0.83[EUR][1000 genomes]
rs13225672	0.82[EUR][1000 genomes]
rs13230545	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13309935	0.90[EUR][1000 genomes]
rs1532571	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1547529	0.82[YRI][hapmap]
rs1643375	0.86[EUR][1000 genomes]
rs1695820	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs17138149	0.82[YRI][hapmap]
rs1875057	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1909508	0.82[YRI][hapmap]
rs1968225	0.89[CEU][hapmap]
rs2036263	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2036264	0.89[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs2077593	0.89[CEU][hapmap]
rs2088653	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2088655	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173570	0.89[CEU][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes]
rs2420173	0.82[EUR][1000 genomes]
rs2420174	0.82[EUR][1000 genomes]
rs2420608	0.81[EUR][1000 genomes]
rs28491091	0.95[EUR][1000 genomes]
rs28714531	0.83[EUR][1000 genomes]
rs2901152	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2901155	0.82[EUR][1000 genomes]
rs2909688	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34913718	0.91[EUR][1000 genomes]
rs3735148	0.89[CEU][hapmap];0.85[TSI][hapmap]
rs3857685	0.86[EUR][1000 genomes]
rs3893216	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4078376	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4149461	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4236208	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4587224	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs4623294	0.83[EUR][1000 genomes]
rs4718319	0.81[EUR][1000 genomes]
rs4718324	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4718328	0.92[EUR][1000 genomes]
rs4718329	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4718330	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.94[EUR][1000 genomes]
rs6460278	0.95[EUR][1000 genomes]
rs6460279	0.95[EUR][1000 genomes]
rs6460282	0.89[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6460284	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6460287	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460290	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6460292	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs6460293	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6460296	0.89[CEU][hapmap]
rs6460302	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6460303	0.83[EUR][1000 genomes]
rs6460304	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6944374	0.89[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.92[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6945019	0.89[CEU][hapmap]
rs6945032	0.89[CEU][hapmap]
rs6945843	0.92[CEU][hapmap];0.85[TSI][hapmap]
rs6947339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap]
rs6950137	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs6951503	0.96[CEU][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6952182	0.89[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6952473	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6956179	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs6958294	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959268	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6960446	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6962717	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs6963228	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6963646	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs6964437	0.89[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6967708	0.82[EUR][1000 genomes]
rs6971509	0.89[CEU][hapmap];0.83[GIH][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap]
rs6971752	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6974614	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs6976714	0.88[LWK][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs6978028	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6979452	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs709595	0.89[CEU][hapmap]
rs709596	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7778322	0.82[EUR][1000 genomes]
rs7781880	0.85[EUR][1000 genomes]
rs7782704	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7782806	0.82[EUR][1000 genomes]
rs7783613	0.89[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7783779	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783889	0.82[YRI][hapmap]
rs778680	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778684	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778686	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778690	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778697	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs778702	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs778703	0.84[EUR][1000 genomes]
rs778705	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs778706	0.89[CEU][hapmap]
rs778707	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs778711	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs778715	0.88[EUR][1000 genomes]
rs778716	0.88[EUR][1000 genomes]
rs778719	0.82[EUR][1000 genomes]
rs778720	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs778722	0.92[CEU][hapmap]
rs778724	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778728	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs778734	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778735	0.82[AFR][1000 genomes]
rs7787482	0.83[EUR][1000 genomes]
rs7789615	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7789768	0.89[CEU][hapmap];0.81[GIH][hapmap];0.87[TSI][hapmap]
rs7794930	0.89[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7796162	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7798630	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs809025	0.88[EUR][1000 genomes]
rs875971	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs880166	1.00[CEU][hapmap];0.88[YRI][hapmap];0.90[EUR][1000 genomes]
rs908915	1.00[CEU][hapmap];0.87[GIH][hapmap];0.82[MEX][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap]
rs937495	0.89[CEU][hapmap];0.87[GIH][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs949930	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv508458	chr7:65724222-65842639	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1034195	chr7:65743409-65828266	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:31)

SNP	Gene	Cis/trans	Tissue	Source
rs778736	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs778736	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx
rs778736	LINC00174	cis	Thyroid	GTEx
rs778736	ASL	cis	cerebellum	SCAN
rs778736	RP4-756H11.3	cis	Artery Tibial	GTEx
rs778736	GS1-124K5.4	cis	Artery Aorta	GTEx
rs778736	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs778736	GS1-124K5.4	cis	Stomach	GTEx
rs778736	RNU6-96P	cis	Thyroid	GTEx
rs778736	GS1-124K5.4	cis	Esophagus Mucosa	GTEx
rs778736	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs778736	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs778736	GUSB	cis	cerebellum	SCAN
rs778736	CRCP	cis	cerebellum	SCAN
rs778736	RP4-756H11.3	cis	Whole Blood	GTEx
rs778736	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs778736	KCTD7	cis	parietal	SCAN
rs778736	CRCP	cis	parietal	SCAN
rs778736	TPST1	cis	lymphoblastoid	seeQTL
rs778736	RABGEF1	cis	parietal	SCAN
rs778736	RP4-756H11.3	cis	Thyroid	GTEx
rs778736	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs778736	ZNF117	cis	parietal	SCAN
rs778736	GTF2IRD1P1	cis	Thyroid	GTEx
rs778736	RP4-756H11.3	cis	lung	GTEx
rs778736	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs778736	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs778736	GS1-124K5.11	cis	Thyroid	GTEx
rs778736	GS1-124K5.2	cis	Whole Blood	GTEx
rs778736	GUSB	cis	parietal	SCAN
rs778736	RABGEF1	cis	cerebellum	SCAN

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65805200-65843600	Weak transcription	Aorta	Aorta
2	chr7:65807800-65814400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:65809600-65817000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:65809600-65817000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:65809600-65818600	Weak transcription	Liver	Liver
6	chr7:65812400-65814600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:65813000-65814000	Enhancers	HepG2	liver
8	chr7:65813000-65815000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:65813000-65815200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:65813200-65814000	Enhancers	Fetal Kidney	kidney
11	chr7:65813200-65814200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:65813200-65814200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:65813200-65814200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr7:65813200-65814200	Enhancers	Osteobl	bone
15	chr7:65813200-65814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:65813200-65814800	Enhancers	Adipose Nuclei	Adipose
17	chr7:65813400-65814000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:65813400-65814200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:65813400-65814200	Enhancers	Primary B cells from peripheral blood	blood
20	chr7:65813400-65814200	Enhancers	Ovary	ovary
21	chr7:65813400-65814200	Enhancers	HSMMtube	muscle
22	chr7:65813400-65814800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:65813400-65815000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr7:65813400-65815000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
25	chr7:65813400-65815000	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr7:65813400-65815000	Enhancers	HMEC	breast
27	chr7:65813400-65821200	Weak transcription	Fetal Stomach	stomach
28	chr7:65813600-65814000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr7:65813600-65814400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:65813600-65814800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:65813600-65815000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr7:65813600-65815200	Enhancers	NHEK	skin
33	chr7:65813800-65814200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr7:65813800-65820600	Weak transcription	Fetal Intestine Small	intestine

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