Variant report

Variant	rs778697
Chromosome Location	chr7:65870426-65870427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 172 )
Associated
traits (count: 31 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs1000464	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs1002053	0.84[CEU][hapmap]
rs10107	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs10215948	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs10224872	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs10228885	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10240949	0.86[EUR][1000 genomes]
rs10250544	0.88[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];0.89[TSI][hapmap];0.94[YRI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10255397	0.82[EUR][1000 genomes]
rs10256544	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs10257427	0.88[CEU][hapmap]
rs10257911	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10260426	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10261398	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.84[EUR][1000 genomes]
rs10263690	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10267430	0.88[CEU][hapmap]
rs10276077	0.84[EUR][1000 genomes]
rs10278014	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs10281499	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs10282433	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs10447522	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10807704	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1083554	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10950033	0.85[EUR][1000 genomes]
rs10950043	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11760844	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs11764589	0.89[EUR][1000 genomes]
rs11765791	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11765965	0.82[CEU][hapmap]
rs11769079	0.93[YRI][hapmap];0.86[EUR][1000 genomes]
rs11984115	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12531677	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532998	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs12534500	0.85[EUR][1000 genomes]
rs12537823	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs12668005	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12673450	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs12698520	0.88[CEU][hapmap]
rs12698522	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12698526	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13226170	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13230545	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13232191	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13240501	0.80[AFR][1000 genomes]
rs13309935	0.81[EUR][1000 genomes]
rs13536	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs1532571	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1547529	0.82[YRI][hapmap]
rs1643375	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1695820	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs17138149	0.82[YRI][hapmap]
rs17747530	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1875057	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1909508	0.82[YRI][hapmap]
rs1968225	0.89[CEU][hapmap]
rs2036263	0.86[EUR][1000 genomes]
rs2036264	0.89[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs2077593	0.89[CEU][hapmap]
rs2088653	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2088655	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2173570	0.89[CEU][hapmap];0.89[YRI][hapmap]
rs2420608	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2420610	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2420611	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28491091	0.86[EUR][1000 genomes]
rs28714531	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2901152	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2909688	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34913718	0.82[EUR][1000 genomes]
rs35378740	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3735148	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs3857685	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3893216	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4078376	0.85[EUR][1000 genomes]
rs4149461	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs4236208	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.87[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.85[EUR][1000 genomes]
rs4587224	0.85[EUR][1000 genomes]
rs4718324	0.83[EUR][1000 genomes]
rs4718328	0.83[EUR][1000 genomes]
rs4718329	0.84[EUR][1000 genomes]
rs4718330	1.00[CEU][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]
rs57739047	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6460278	0.86[EUR][1000 genomes]
rs6460279	0.86[EUR][1000 genomes]
rs6460282	0.88[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs6460284	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6460287	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6460290	0.86[EUR][1000 genomes]
rs6460292	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap]
rs6460293	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6460296	0.89[CEU][hapmap]
rs6460301	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6460302	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6460303	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6460304	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6460307	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap]
rs6944374	0.88[ASW][hapmap];0.96[CEU][hapmap];0.95[GIH][hapmap];0.91[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs6945019	0.89[CEU][hapmap]
rs6945032	0.89[CEU][hapmap]
rs6945775	0.86[AFR][1000 genomes]
rs6945843	0.92[CEU][hapmap];0.82[TSI][hapmap]
rs6947339	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs6950137	1.00[CEU][hapmap];0.94[YRI][hapmap]
rs6951503	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs6952182	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs6952473	0.83[EUR][1000 genomes]
rs6955837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap]
rs6956179	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap]
rs6958294	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6959268	1.00[CEU][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.84[EUR][1000 genomes]
rs6960446	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6961990	0.81[AFR][1000 genomes]
rs6962717	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs6963228	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6963646	0.89[CEU][hapmap];0.86[TSI][hapmap]
rs6964437	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.87[EUR][1000 genomes]
rs6971509	0.89[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap]
rs6971752	0.84[EUR][1000 genomes]
rs6974614	1.00[CEU][hapmap];0.91[GIH][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.98[TSI][hapmap]
rs6976714	0.96[LWK][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6978028	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979452	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980451	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs709595	0.89[CEU][hapmap]
rs709596	0.85[EUR][1000 genomes]
rs7778322	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7782704	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs7783613	0.89[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs7783779	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7783889	0.82[YRI][hapmap]
rs778680	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs778684	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs778686	0.86[EUR][1000 genomes]
rs778690	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs778702	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs778703	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs778705	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs778706	0.89[CEU][hapmap]
rs778707	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs778709	0.88[AFR][1000 genomes]
rs778711	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs778715	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778716	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778719	0.86[EUR][1000 genomes]
rs778720	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs778722	0.92[CEU][hapmap]
rs778724	0.86[EUR][1000 genomes]
rs778728	0.83[EUR][1000 genomes]
rs778734	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs778736	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7789615	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7789768	0.89[CEU][hapmap];0.81[GIH][hapmap];0.84[TSI][hapmap]
rs7794930	0.89[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs7796162	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7798630	1.00[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs801194	0.80[EUR][1000 genomes]
rs801195	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap]
rs801202	0.80[AFR][1000 genomes]
rs801203	0.80[AFR][1000 genomes]
rs801204	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap]
rs801206	0.80[AFR][1000 genomes]
rs801209	0.80[AFR][1000 genomes]
rs809025	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs880166	1.00[CEU][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs937495	0.89[CEU][hapmap];0.87[GIH][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap]
rs949930	1.00[CEU][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv981506	chr7:65842694-65876873	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:31)

SNP	Gene	Cis/trans	Tissue	Source
rs778697	RP4-756H11.3	cis	Thyroid	GTEx
rs778697	GUSB	cis	cerebellum	SCAN
rs778697	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs778697	GS1-124K5.4	cis	Artery Aorta	GTEx
rs778697	ZNF117	cis	parietal	SCAN
rs778697	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs778697	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs778697	RP4-756H11.3	cis	lung	GTEx
rs778697	RNU6-96P	cis	Thyroid	GTEx
rs778697	RABGEF1	cis	parietal	SCAN
rs778697	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs778697	GTF2IRD1P1	cis	Thyroid	GTEx
rs778697	RAF1	trans	cerebellum	SCAN
rs778697	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs778697	GS1-124K5.4	cis	Stomach	GTEx
rs778697	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs778697	RABGEF1	cis	cerebellum	SCAN
rs778697	CRCP	cis	cerebellum	SCAN
rs778697	KCTD7	cis	parietal	SCAN
rs778697	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx
rs778697	TPST1	cis	lymphoblastoid	seeQTL
rs778697	ASL	cis	cerebellum	SCAN
rs778697	GS1-124K5.2	cis	Whole Blood	GTEx
rs778697	GUSB	cis	parietal	SCAN
rs778697	GS1-124K5.11	cis	Thyroid	GTEx
rs778697	RP4-756H11.3	cis	Artery Tibial	GTEx
rs778697	CRCP	cis	parietal	SCAN
rs778697	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs778697	GS1-124K5.4	cis	Esophagus Mucosa	GTEx
rs778697	LINC00174	cis	Thyroid	GTEx
rs778697	ASL	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65840000-65878400	Weak transcription	Psoas Muscle	Psoas
2	chr7:65840400-65873400	Weak transcription	K562	blood
3	chr7:65841400-65875400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:65843400-65877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:65843600-65878200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:65844000-65878400	Weak transcription	Thymus	Thymus
7	chr7:65845000-65873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:65845000-65873600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr7:65845000-65878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:65845000-65878000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr7:65845000-65878200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:65845000-65878200	Weak transcription	Right Ventricle	heart
13	chr7:65845000-65878400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:65845000-65878400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:65845000-65878400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr7:65845200-65873400	Weak transcription	HepG2	liver
17	chr7:65845200-65878200	Weak transcription	Left Ventricle	heart
18	chr7:65845200-65878600	Weak transcription	Aorta	Aorta
19	chr7:65845400-65875400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr7:65845400-65877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:65845400-65878000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:65845400-65878200	Weak transcription	Brain Germinal Matrix	brain
23	chr7:65845400-65878200	Weak transcription	Pancreas	Pancrea
24	chr7:65845600-65873400	Weak transcription	Ovary	ovary
25	chr7:65845600-65877400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:65845600-65878200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:65845600-65878200	Weak transcription	Fetal Thymus	thymus
28	chr7:65845600-65878400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:65845600-65878600	Weak transcription	Gastric	stomach
30	chr7:65846200-65875400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:65846200-65878200	Weak transcription	Fetal Lung	lung
32	chr7:65847800-65878400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr7:65850800-65878200	Weak transcription	Lung	lung
34	chr7:65854800-65878400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:65858600-65874400	Weak transcription	GM12878-XiMat	blood
36	chr7:65858600-65878200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr7:65858800-65876400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:65861000-65878600	Weak transcription	HSMM	muscle
39	chr7:65861600-65873200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:65861800-65878400	Weak transcription	HSMMtube	muscle
41	chr7:65861800-65880800	Weak transcription	Hela-S3	cervix
42	chr7:65863000-65878000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:65863000-65878200	Weak transcription	Fetal Brain Male	brain
44	chr7:65863400-65875000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr7:65863400-65878400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr7:65863600-65876200	Strong transcription	Liver	Liver
47	chr7:65863800-65878000	Weak transcription	Brain Angular Gyrus	brain
48	chr7:65863800-65878200	Weak transcription	Colonic Mucosa	Colon
49	chr7:65864400-65872400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:65864600-65878200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links