Variant report

Variant	rs4718329
Chromosome Location	chr7:65695034-65695035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 20 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1000464	0.85[EUR][1000 genomes]
rs10224872	0.87[EUR][1000 genomes]
rs10228885	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10240949	0.87[EUR][1000 genomes]
rs10250544	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10255397	0.86[EUR][1000 genomes]
rs10256544	0.90[EUR][1000 genomes]
rs10257911	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10260426	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10261398	0.87[EUR][1000 genomes]
rs10263690	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10272149	0.84[EUR][1000 genomes]
rs10276077	0.87[EUR][1000 genomes]
rs10282433	0.88[EUR][1000 genomes]
rs10447522	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1083554	0.86[EUR][1000 genomes]
rs10950033	0.88[EUR][1000 genomes]
rs11760844	0.88[EUR][1000 genomes]
rs11769079	0.83[EUR][1000 genomes]
rs11984115	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12531677	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12534500	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12537823	0.88[EUR][1000 genomes]
rs13225672	0.84[EUR][1000 genomes]
rs13230545	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13309935	0.88[EUR][1000 genomes]
rs1532571	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1875057	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2036263	0.87[EUR][1000 genomes]
rs2088653	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2088655	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2420173	0.81[EUR][1000 genomes]
rs2420174	0.81[EUR][1000 genomes]
rs28391294	0.81[EUR][1000 genomes]
rs28491091	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2901152	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2909688	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34913718	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3893216	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4078376	0.88[EUR][1000 genomes]
rs4149461	0.88[EUR][1000 genomes]
rs4236208	0.88[EUR][1000 genomes]
rs4587224	0.88[EUR][1000 genomes]
rs4718319	0.80[EUR][1000 genomes]
rs4718324	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4718328	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4718330	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6460278	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6460279	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6460282	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6460284	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6460287	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6460290	0.87[EUR][1000 genomes]
rs6460293	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6944374	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6951503	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6952182	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6952473	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6958294	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6959268	0.86[EUR][1000 genomes]
rs6960446	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6963228	0.83[EUR][1000 genomes]
rs6964437	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967708	0.81[EUR][1000 genomes]
rs6971752	0.87[EUR][1000 genomes]
rs6974614	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6978028	0.84[EUR][1000 genomes]
rs6979452	0.92[EUR][1000 genomes]
rs709596	0.86[EUR][1000 genomes]
rs7781880	0.84[EUR][1000 genomes]
rs7782704	0.87[EUR][1000 genomes]
rs7782806	0.81[EUR][1000 genomes]
rs7783779	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs778680	0.86[EUR][1000 genomes]
rs778684	0.87[EUR][1000 genomes]
rs778686	0.87[EUR][1000 genomes]
rs778690	0.84[EUR][1000 genomes]
rs778697	0.84[EUR][1000 genomes]
rs778705	0.85[EUR][1000 genomes]
rs778707	0.85[EUR][1000 genomes]
rs778711	0.85[EUR][1000 genomes]
rs778715	0.81[EUR][1000 genomes]
rs778716	0.81[EUR][1000 genomes]
rs778720	0.81[EUR][1000 genomes]
rs778724	0.87[EUR][1000 genomes]
rs778728	0.84[EUR][1000 genomes]
rs778734	0.87[EUR][1000 genomes]
rs778736	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7787482	0.87[EUR][1000 genomes]
rs7789615	0.82[EUR][1000 genomes]
rs7796162	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7798630	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs809025	0.81[EUR][1000 genomes]
rs880166	0.88[EUR][1000 genomes]
rs949930	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:20)

SNP	Gene	Cis/trans	Tissue	Source
rs4718329	GS1-124K5.2	cis	Whole Blood	GTEx
rs4718329	RNU6-96P	cis	Thyroid	GTEx
rs4718329	LINC00174	cis	Thyroid	GTEx
rs4718329	RP4-756H11.3	cis	Thyroid	GTEx
rs4718329	RP4-756H11.3	cis	Whole Blood	GTEx
rs4718329	GTF2IRD1P1	cis	Thyroid	GTEx
rs4718329	RP4-756H11.3	cis	Artery Tibial	GTEx
rs4718329	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs4718329	GS1-124K5.4	cis	Stomach	GTEx
rs4718329	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs4718329	GS1-124K5.4	cis	Artery Aorta	GTEx
rs4718329	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs4718329	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs4718329	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs4718329	GS1-124K5.11	cis	Thyroid	GTEx
rs4718329	RP4-756H11.3	cis	lung	GTEx
rs4718329	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs4718329	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs4718329	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx
rs4718329	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
2	chr7:65676000-65696200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr7:65676000-65716800	Weak transcription	Primary B cells from cord blood	blood
4	chr7:65676200-65696200	Weak transcription	Fetal Stomach	stomach
5	chr7:65685600-65696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:65686800-65701600	Weak transcription	Osteobl	bone
7	chr7:65686800-65715400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:65687000-65701800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:65687000-65701800	Weak transcription	NHDF-Ad	bronchial
10	chr7:65687800-65701800	Weak transcription	Spleen	Spleen
11	chr7:65687800-65703400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr7:65689400-65703600	Weak transcription	NHLF	lung
13	chr7:65689600-65695800	Weak transcription	Brain Substantia Nigra	brain
14	chr7:65689600-65696200	Weak transcription	Lung	lung
15	chr7:65689600-65697800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:65689600-65701800	Weak transcription	Gastric	stomach
17	chr7:65689600-65715800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:65689800-65695600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr7:65689800-65696200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr7:65689800-65697800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:65689800-65701800	Weak transcription	Fetal Lung	lung
22	chr7:65689800-65701800	Weak transcription	HMEC	breast
23	chr7:65689800-65702000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:65690000-65698400	Weak transcription	Liver	Liver
25	chr7:65690200-65701800	Weak transcription	Ovary	ovary
26	chr7:65691200-65700200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:65694400-65698400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:65694600-65695600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:65694600-65696600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:65694800-65695400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:65694800-65696200	Weak transcription	Esophagus	oesophagus
32	chr7:65695000-65695600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links