Variant report

Variant	rs6967708
Chromosome Location	chr7:65657313-65657314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1000464	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1002053	0.85[CEU][hapmap]
rs10215948	0.89[CEU][hapmap]
rs10224872	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10228885	1.00[CEU][hapmap];0.95[YRI][hapmap];0.82[EUR][1000 genomes]
rs10240249	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10240949	0.84[EUR][1000 genomes]
rs10250544	0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs10253922	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10255397	0.80[EUR][1000 genomes]
rs10256544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10257427	0.89[CEU][hapmap]
rs10257911	0.80[EUR][1000 genomes]
rs10260426	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs10261398	1.00[CEU][hapmap];0.94[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10263690	0.83[EUR][1000 genomes]
rs10267430	0.89[CEU][hapmap]
rs10268656	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10271553	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10272149	0.84[ASN][1000 genomes]
rs10276077	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10282433	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10447522	1.00[CEU][hapmap];0.90[YRI][hapmap];0.83[EUR][1000 genomes]
rs10950033	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1129531	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1167390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1167399	0.82[AMR][1000 genomes]
rs1167406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs11760844	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11765965	0.83[CEU][hapmap]
rs11769079	0.82[YRI][hapmap];0.80[EUR][1000 genomes]
rs1183245	0.89[CEU][hapmap]
rs11971949	0.91[AFR][1000 genomes]
rs11974219	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11974264	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11984115	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs12531677	0.83[EUR][1000 genomes]
rs12534500	0.84[EUR][1000 genomes]
rs12537823	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13225383	0.83[AMR][1000 genomes]
rs13225672	0.80[EUR][1000 genomes]
rs13230545	0.83[EUR][1000 genomes]
rs13240492	0.90[AFR][1000 genomes]
rs13245728	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs13309935	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532571	0.83[EUR][1000 genomes]
rs1540651	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1565531	0.83[AMR][1000 genomes]
rs1612452	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1616988	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes]
rs1695820	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs1875057	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs1976200	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs1983372	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036263	0.84[EUR][1000 genomes]
rs2036264	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs2087647	0.93[CEU][hapmap]
rs2088653	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs2088655	1.00[CEU][hapmap];0.89[YRI][hapmap];0.83[EUR][1000 genomes]
rs2173570	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs2220626	0.93[CEU][hapmap]
rs2249458	0.96[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2420168	0.81[AMR][1000 genomes]
rs2420173	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2420174	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2460430	0.82[AMR][1000 genomes]
rs2460432	0.82[AMR][1000 genomes]
rs28391294	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28470208	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28491091	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2901152	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs2949696	0.87[AFR][1000 genomes]
rs313829	0.83[YRI][hapmap]
rs34550048	0.82[ASN][1000 genomes]
rs34913718	0.81[EUR][1000 genomes]
rs35028832	0.83[AMR][1000 genomes]
rs35034167	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4078376	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4149461	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4236208	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4368860	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4587224	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4612218	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4718319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718324	0.82[EUR][1000 genomes]
rs4718328	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4718329	0.81[EUR][1000 genomes]
rs4718330	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57866200	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59466412	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62467451	0.80[ASN][1000 genomes]
rs6460278	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6460279	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6460282	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6460284	0.83[EUR][1000 genomes]
rs6460287	0.82[EUR][1000 genomes]
rs6460290	0.84[EUR][1000 genomes]
rs6460292	0.89[CEU][hapmap]
rs6460293	1.00[CEU][hapmap];0.94[YRI][hapmap];0.82[EUR][1000 genomes]
rs6944374	0.96[CEU][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6945843	0.92[CEU][hapmap]
rs6946143	0.89[CEU][hapmap]
rs6951503	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs6951787	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6952182	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6952473	0.81[EUR][1000 genomes]
rs6956179	0.89[CEU][hapmap]
rs6957690	0.89[AFR][1000 genomes]
rs6958294	0.83[EUR][1000 genomes]
rs6958484	0.88[CEU][hapmap]
rs6959268	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs6960446	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs6961717	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs6963646	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs6964437	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[EUR][1000 genomes]
rs6971509	0.89[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs6971752	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6974614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6979452	0.81[EUR][1000 genomes]
rs697968	0.89[CEU][hapmap]
rs697970	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs709595	0.89[CEU][hapmap]
rs709596	0.83[EUR][1000 genomes]
rs709608	0.84[AMR][1000 genomes]
rs709609	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes]
rs7782704	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs7782806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783613	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7783779	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes]
rs778680	0.83[EUR][1000 genomes]
rs778684	0.84[EUR][1000 genomes]
rs778686	0.84[EUR][1000 genomes]
rs7786892	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs778711	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs778720	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs778722	0.92[CEU][hapmap]
rs778724	0.84[EUR][1000 genomes]
rs778728	0.81[EUR][1000 genomes]
rs778734	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs778736	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes]
rs7787482	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7794930	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7796162	0.81[EUR][1000 genomes]
rs7798630	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes]
rs7801282	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs7809814	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs875971	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs880166	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs908915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs937495	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs949930	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9767916	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1021186	chr7:65492601-65663438	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs6967708	RP4-756H11.3	cis	lung	GTEx
rs6967708	GS1-124K5.11	cis	Thyroid	GTEx
rs6967708	LINC00174	cis	Thyroid	GTEx
rs6967708	RP4-756H11.3	cis	Adipose Subcutaneous	GTEx
rs6967708	RP4-756H11.3	cis	Nerve Tibial	GTEx
rs6967708	GS1-124K5.2	cis	Whole Blood	GTEx
rs6967708	RP4-756H11.3	cis	Skin Sun Exposed Lower leg	GTEx
rs6967708	RP4-756H11.3	cis	Muscle Skeletal	GTEx
rs6967708	RP4-756H11.3	cis	Esophagus Mucosa	GTEx
rs6967708	RP4-756H11.3	cis	Esophagus Muscularis	GTEx
rs6967708	RP4-756H11.3	cis	Artery Tibial	GTEx
rs6967708	GTF2IRD1P1	cis	Thyroid	GTEx
rs6967708	ASL	Cis_1M	lymphoblastoid	RTeQTL
rs6967708	RNU6-96P	cis	Thyroid	GTEx
rs6967708	GS1-124K5.4	cis	Stomach	GTEx
rs6967708	RP4-756H11.3	cis	Thyroid	GTEx
rs6967708	RP4-756H11.3	cis	Heart Left Ventricle	GTEx
rs6967708	GS1-124K5.4	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65652800-65660600	Weak transcription	Spleen	Spleen
2	chr7:65655800-65657800	Weak transcription	HepG2	liver
3	chr7:65656200-65660600	Weak transcription	Liver	Liver

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