Variant report
Variant | rs11681037 |
---|---|
Chromosome Location | chr2:32029202-32029203 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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Variant related genes | Relation type |
---|---|
ENSG00000223647 | TF binding region |
rs_ID | r2[population] |
---|---|
rs10490357 | 0.83[ASN][1000 genomes] |
rs1090817 | 0.81[EUR][1000 genomes] |
rs12993413 | 0.83[ASN][1000 genomes] |
rs13014501 | 0.80[ASN][1000 genomes] |
rs13022655 | 0.80[ASN][1000 genomes] |
rs13028676 | 0.85[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs13409437 | 0.84[EUR][1000 genomes] |
rs1383023 | 0.80[ASN][1000 genomes] |
rs160791 | 0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs160802 | 0.84[EUR][1000 genomes] |
rs160807 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs17011641 | 0.83[ASN][1000 genomes] |
rs17766509 | 0.83[ASN][1000 genomes] |
rs17817607 | 0.83[ASN][1000 genomes] |
rs223620 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2366295 | 0.84[EUR][1000 genomes] |
rs35631143 | 0.83[ASN][1000 genomes] |
rs35820518 | 0.80[ASN][1000 genomes] |
rs6543643 | 0.81[EUR][1000 genomes] |
rs66949767 | 0.83[ASN][1000 genomes] |
rs6736930 | 0.83[ASN][1000 genomes] |
rs6761760 | 0.83[ASN][1000 genomes] |
rs6761878 | 0.83[ASN][1000 genomes] |
rs72857279 | 0.80[ASN][1000 genomes] |
rs7560472 | 0.83[ASN][1000 genomes] |
rs7560714 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532648 | chr2:31591498-32312698 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 39 gene(s) | inside rSNPs | diseases |
2 | esv3376782 | chr2:31861607-32046180 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1015021 | chr2:31972738-32030696 | Enhancers Weak transcription | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv873777 | chr2:32019747-32197123 | Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:32027600-32030800 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
2 | chr2:32028800-32030800 | Weak transcription | Pancreas | Pancrea |
3 | chr2:32029200-32030800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |