Variant report

Variant	rs160807
Chromosome Location	chr2:32040425-32040426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 137 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs1005460	0.90[ASN][1000 genomes]
rs1011309	0.90[ASN][1000 genomes]
rs10153899	0.90[ASN][1000 genomes]
rs10490357	0.97[ASN][1000 genomes]
rs10490358	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10490359	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1090817	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11124273	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11681037	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11883601	0.87[ASN][1000 genomes]
rs11884169	0.87[ASN][1000 genomes]
rs11888094	0.91[ASN][1000 genomes]
rs11890763	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11899296	0.88[ASN][1000 genomes]
rs11901415	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11902241	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12712325	0.90[ASN][1000 genomes]
rs12988908	0.91[ASN][1000 genomes]
rs12990358	0.85[ASN][1000 genomes]
rs12992916	1.00[JPT][hapmap]
rs12993413	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12994708	0.90[ASN][1000 genomes]
rs12997171	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13003695	0.90[ASN][1000 genomes]
rs13005816	1.00[CHB][hapmap];0.89[JPT][hapmap];0.97[LWK][hapmap];0.86[TSI][hapmap];0.94[YRI][hapmap];0.82[ASN][1000 genomes]
rs13006751	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13007025	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13013099	0.88[ASN][1000 genomes]
rs13014501	0.97[ASN][1000 genomes]
rs13018592	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs13021718	0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs13022655	0.94[ASN][1000 genomes]
rs13022696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13022719	0.86[CHB][hapmap]
rs13024644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13028676	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13409437	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13414295	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs1383023	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs160791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs160802	1.00[CEU][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.86[TSI][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17011641	0.97[ASN][1000 genomes]
rs17011644	0.90[ASN][1000 genomes]
rs17011673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.88[ASN][1000 genomes]
rs17011697	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17011710	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17011711	0.86[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs17011721	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.87[ASN][1000 genomes]
rs17011722	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17011742	0.86[TSI][hapmap]
rs17766509	0.97[ASN][1000 genomes]
rs17817040	0.87[ASN][1000 genomes]
rs17817607	0.97[ASN][1000 genomes]
rs17818002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1808112	0.85[ASN][1000 genomes]
rs2007608	0.86[ASN][1000 genomes]
rs2064814	0.88[ASN][1000 genomes]
rs221196	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs221198	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs223620	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.93[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs223622	0.88[CEU][hapmap];0.94[YRI][hapmap]
rs2366295	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34056419	0.88[ASN][1000 genomes]
rs34077616	0.87[ASN][1000 genomes]
rs34321580	0.88[ASN][1000 genomes]
rs34369001	0.88[ASN][1000 genomes]
rs34437462	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34497289	0.87[ASN][1000 genomes]
rs34509832	0.80[AMR][1000 genomes]
rs34540872	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs34617455	0.88[ASN][1000 genomes]
rs34645083	0.90[ASN][1000 genomes]
rs34738692	0.87[ASN][1000 genomes]
rs34805211	0.82[ASN][1000 genomes]
rs34893975	0.91[ASN][1000 genomes]
rs34970173	0.91[ASN][1000 genomes]
rs34973007	0.84[ASN][1000 genomes]
rs35178826	0.88[ASN][1000 genomes]
rs35262968	0.86[CHB][hapmap]
rs35382589	0.87[ASN][1000 genomes]
rs35397112	0.87[ASN][1000 genomes]
rs35502701	0.88[ASN][1000 genomes]
rs35514510	0.91[ASN][1000 genomes]
rs35631143	0.97[ASN][1000 genomes]
rs35820518	0.94[ASN][1000 genomes]
rs3754837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3769607	1.00[JPT][hapmap]
rs3769614	0.88[ASN][1000 genomes]
rs3795922	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.90[ASN][1000 genomes]
rs62142074	0.87[ASN][1000 genomes]
rs62142076	0.88[ASN][1000 genomes]
rs6543643	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6543644	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs66511526	0.84[ASN][1000 genomes]
rs66522244	0.88[ASN][1000 genomes]
rs66735346	0.91[ASN][1000 genomes]
rs66863308	0.88[ASN][1000 genomes]
rs66949767	0.97[ASN][1000 genomes]
rs67048620	0.88[ASN][1000 genomes]
rs6718407	0.83[ASN][1000 genomes]
rs6721692	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6729580	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6733630	0.86[CHB][hapmap]
rs6736930	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6739654	0.91[ASN][1000 genomes]
rs67493880	0.87[ASN][1000 genomes]
rs67550529	0.86[ASN][1000 genomes]
rs6755740	0.85[ASN][1000 genomes]
rs6761760	0.97[ASN][1000 genomes]
rs6761878	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67780569	0.88[ASN][1000 genomes]
rs68039196	0.88[ASN][1000 genomes]
rs68051012	0.87[ASN][1000 genomes]
rs68076008	0.88[ASN][1000 genomes]
rs71446027	0.87[ASN][1000 genomes]
rs72857279	0.97[ASN][1000 genomes]
rs72859088	0.88[ASN][1000 genomes]
rs72860906	0.90[ASN][1000 genomes]
rs72860941	0.90[ASN][1000 genomes]
rs72861000	0.85[ASN][1000 genomes]
rs7559329	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7560472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[ASN][1000 genomes]
rs7560714	0.97[ASN][1000 genomes]
rs7567093	0.86[EUR][1000 genomes]
rs7574910	0.86[CHB][hapmap];0.86[TSI][hapmap]
rs7577579	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7591270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7598154	1.00[JPT][hapmap];0.86[TSI][hapmap]
rs7601038	0.87[ASN][1000 genomes]
rs806587	0.81[EUR][1000 genomes]
rs806590	0.85[EUR][1000 genomes]
rs806591	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9789452	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32040200-32040800	Enhancers	A549	lung

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