Variant report

Variant	rs13018592
Chromosome Location	chr2:32169008-32169009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32167207..32169044-chr2:32185983..32188550,2	MCF-7	breast:
2	chr2:32165617..32167140-chr2:32168649..32171458,2	MCF-7	breast:
3	chr2:32166637..32169522-chr2:32234606..32236345,2	K562	blood:

Variant related genes	Relation type
ENSG00000162959	Chromatin interaction

Extended variants
information (count: 181 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:177)

rs_ID	r²[population]
rs1005460	0.85[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1011309	1.00[ASN][1000 genomes]
rs10153899	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10490357	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10490358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10490359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883601	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11884169	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11885062	0.80[EUR][1000 genomes]
rs11887441	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11888094	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11890763	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11893435	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11897154	0.86[EUR][1000 genomes]
rs11898765	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11899296	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11901415	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11902241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11903729	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12712325	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12988908	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12990358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12992916	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12993413	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12993808	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12994708	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994869	0.82[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12997171	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12997994	0.81[EUR][1000 genomes]
rs13003695	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13005816	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13006302	0.87[ASN][1000 genomes]
rs13006751	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007025	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13013099	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13014501	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13021718	0.81[ASW][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.98[ASN][1000 genomes]
rs13022518	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13022655	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13022696	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13022719	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[MEX][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13024535	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13024644	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13028676	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13034714	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13034933	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13409437	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13414295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383023	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160791	0.88[ASN][1000 genomes]
rs160802	0.92[GIH][hapmap];0.90[JPT][hapmap];0.87[TSI][hapmap];0.98[ASN][1000 genomes]
rs160807	0.90[ASN][1000 genomes]
rs17011641	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17011644	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17011673	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011697	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011710	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011711	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17011721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17011722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17011740	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011742	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17766509	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17817040	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17817607	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17818002	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1808112	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2007608	0.90[ASN][1000 genomes]
rs2064814	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2145038	0.87[ASN][1000 genomes]
rs221196	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs221198	0.85[ASN][1000 genomes]
rs223620	0.86[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.87[ASN][1000 genomes]
rs2366295	0.85[ASN][1000 genomes]
rs33998544	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34056419	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34077616	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34231321	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34316760	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34321580	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34369001	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34432107	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34437462	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34457675	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34460762	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34492168	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34497289	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34509832	0.83[EUR][1000 genomes]
rs34540872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34569213	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34617455	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34645083	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34738692	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34776070	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34805211	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34893975	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34897620	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34970173	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34973007	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35178826	0.98[ASN][1000 genomes]
rs35179884	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35262968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35382589	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35397112	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35404750	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35502701	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35514510	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35574090	0.81[EUR][1000 genomes]
rs35631143	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35653492	0.88[ASN][1000 genomes]
rs35820518	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36048738	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3754837	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769607	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3769614	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3795922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851309	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs56821465	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60954094	0.86[ASN][1000 genomes]
rs62142074	0.97[ASN][1000 genomes]
rs62142076	0.98[ASN][1000 genomes]
rs6543643	0.95[ASN][1000 genomes]
rs6543644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6543645	0.83[AFR][1000 genomes]
rs66511526	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66522244	0.98[ASN][1000 genomes]
rs66735346	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66863308	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66949767	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67048620	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6712798	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6718407	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6721692	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.81[MKK][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6729580	0.91[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67335141	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6733630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6736930	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6739654	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6746749	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67493880	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67517941	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67550529	0.96[ASN][1000 genomes]
rs67557317	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6755740	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6761760	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6761878	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67780569	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67957236	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs68039196	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs68051012	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68076008	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71446026	0.85[ASN][1000 genomes]
rs71446027	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71446035	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71446042	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71446044	0.87[ASN][1000 genomes]
rs71446045	0.87[ASN][1000 genomes]
rs72857279	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72859088	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72860906	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860941	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860982	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72861000	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7559329	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7560472	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7560714	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7562388	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7574910	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7577579	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7587341	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7591270	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7598154	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7601038	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7607030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7607225	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs875167	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv508718	chr2:32154215-32172810	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13018592	SLC30A6	cis	parietal	SCAN
rs13018592	CLIP4	cis	cerebellum	SCAN

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr2:32075800-32170000	Weak transcription	Aorta	Aorta
3	chr2:32086600-32174400	Weak transcription	NHLF	lung
4	chr2:32099600-32193000	Weak transcription	Hela-S3	cervix
5	chr2:32116200-32173000	Weak transcription	HSMMtube	muscle
6	chr2:32116800-32169400	Weak transcription	Small Intestine	intestine
7	chr2:32116800-32182200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr2:32117000-32205200	Weak transcription	NH-A	brain
9	chr2:32118600-32170600	Weak transcription	Gastric	stomach
10	chr2:32119200-32181400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:32126200-32170400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr2:32127400-32190200	Weak transcription	Lung	lung
13	chr2:32127800-32169800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:32128400-32170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:32132400-32183000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:32136600-32188800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr2:32137000-32170000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:32137000-32189200	Weak transcription	Fetal Kidney	kidney
19	chr2:32139200-32173600	Weak transcription	Brain Hippocampus Middle	brain
20	chr2:32143000-32172000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr2:32145000-32183000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:32145200-32170200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:32145200-32173600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr2:32145200-32190800	Weak transcription	Pancreas	Pancrea
25	chr2:32146400-32183400	Weak transcription	Psoas Muscle	Psoas
26	chr2:32148200-32170400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr2:32158200-32169800	Weak transcription	HUVEC	blood vessel
28	chr2:32159200-32173600	Weak transcription	Right Ventricle	heart
29	chr2:32160600-32169800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:32162000-32169600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:32162200-32170000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:32165400-32169400	Weak transcription	K562	blood
33	chr2:32165800-32172800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr2:32166000-32169600	Weak transcription	GM12878-XiMat	blood
35	chr2:32166800-32182400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:32167200-32183000	Weak transcription	Colon Smooth Muscle	Colon
37	chr2:32167200-32193200	Weak transcription	HSMM	muscle
38	chr2:32167600-32172200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:32168000-32169200	Enhancers	Fetal Heart	heart
40	chr2:32168000-32179400	Weak transcription	NHEK	skin
41	chr2:32168000-32180600	Weak transcription	Primary neutrophils fromperipheralblood	blood
42	chr2:32168200-32169400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:32168200-32169800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr2:32168200-32170000	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr2:32168200-32170200	Weak transcription	Osteobl	bone
46	chr2:32168200-32170400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr2:32168200-32170800	Weak transcription	Liver	Liver
48	chr2:32168200-32171800	Weak transcription	Placenta	Placenta
49	chr2:32168200-32172000	Weak transcription	NHDF-Ad	bronchial
50	chr2:32168200-32183000	Weak transcription	Primary T cells fromperipheralblood	blood

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