Variant report

Variant	rs17011740
Chromosome Location	chr2:32237289-32237290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:32235493-32237303	GM12891	blood:	n/a	n/a
2	ZNF384	chr2:32237289-32237503	K562	blood:	n/a	n/a

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:32233869..32239615-chr2:32259766..32267170,13	K562	blood:
2	chr2:32232898..32237970-chr2:32287390..32290443,5	K562	blood:
3	chr2:32233185..32238105-chr2:32388775..32395245,11	K562	blood:
4	chr2:32231133..32238127-chr2:32263164..32266706,7	MCF-7	breast:
5	chr2:32077309..32079033-chr2:32235796..32237678,2	K562	blood:
6	chr2:32235889..32238860-chr2:32287017..32290574,4	MCF-7	breast:
7	chr2:32233050..32238839-chr2:32262715..32266551,10	MCF-7	breast:
8	chr2:32233309..32238481-chr2:32286150..32290599,7	MCF-7	breast:
9	chr2:32234151..32237531-chr2:32262421..32266825,7	K562	blood:
10	chr2:32235154..32237462-chr2:32390889..32392468,2	MCF-7	breast:
11	chr2:32236441..32237946-chr2:32298713..32301695,2	K562	blood:
12	chr2:32233077..32237611-chr2:32388376..32395245,10	K562	blood:

No data

Variant related genes	Relation type
MEMO1	TF binding region
ENSG00000271228	TF binding region
ENSG00000162961	Chromatin interaction
ENSG00000272716	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000021574	Chromatin interaction
ENSG00000273165	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs1005460	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10153899	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10490357	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10490358	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10490359	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11124273	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs11884169	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11887441	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs11888094	0.89[EUR][1000 genomes]
rs11890763	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[LWK][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11893435	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11897154	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11898765	0.81[EUR][1000 genomes]
rs11899296	0.89[EUR][1000 genomes]
rs11901415	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11902241	1.00[CEU][hapmap]
rs11903729	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12712325	0.85[EUR][1000 genomes]
rs12988908	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12990358	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12992916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12993413	0.84[EUR][1000 genomes]
rs12993808	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12994708	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12994869	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12997171	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13003695	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13005816	1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs13006751	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13007025	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13013099	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13014501	0.91[EUR][1000 genomes]
rs13018592	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13021718	0.81[ASW][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.94[LWK][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap]
rs13022518	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13022696	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13022719	1.00[CEU][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13024535	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13024644	1.00[CEU][hapmap]
rs13028676	0.84[EUR][1000 genomes]
rs13034714	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13034933	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs1383023	0.89[EUR][1000 genomes]
rs17011641	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17011644	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17011673	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17011697	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011710	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011711	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011721	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17011722	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17011742	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17766509	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17817607	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17818002	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1808112	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2064814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2145038	0.83[EUR][1000 genomes]
rs33998544	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34056419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34077616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34231321	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34246971	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34316760	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34321580	0.89[EUR][1000 genomes]
rs34369001	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34432107	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34437462	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34457675	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34460762	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34492168	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34497289	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34540872	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34569213	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34617455	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34645083	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34738692	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34776070	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34805211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34897620	0.93[EUR][1000 genomes]
rs34970173	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34973007	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35179884	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35262968	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35382589	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35397112	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35404750	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35502701	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35514510	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35631143	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35653492	0.82[EUR][1000 genomes]
rs36048738	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3754837	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3769607	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3769614	0.84[EUR][1000 genomes]
rs3795922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56821465	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60954094	0.84[ASN][1000 genomes]
rs6543644	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs66511526	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66735346	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66863308	0.89[EUR][1000 genomes]
rs66949767	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67048620	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6712798	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6718407	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6721692	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6729580	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.82[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67335141	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6733630	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6736930	0.84[EUR][1000 genomes]
rs6739654	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6746749	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67493880	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67517941	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67557317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6755740	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6761760	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6761878	0.84[EUR][1000 genomes]
rs67780569	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67957236	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68039196	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68051012	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68076008	0.89[EUR][1000 genomes]
rs71446026	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71446027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71446035	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71446040	0.87[EUR][1000 genomes]
rs71446042	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72857279	0.90[EUR][1000 genomes]
rs72859088	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72860906	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72860941	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72860982	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72861000	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7559329	0.91[ASW][hapmap];1.00[CHD][hapmap];0.82[LWK][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs7560472	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7560714	0.83[EUR][1000 genomes]
rs7562388	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7574910	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7577579	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7580118	1.00[CHD][hapmap];0.88[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs7587341	0.88[EUR][1000 genomes]
rs7591270	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7598154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7601038	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7607030	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7607225	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs875167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv3339024	chr2:32233873-32237321	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17011740	CLIP4	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32236400-32245000	Weak transcription	Lung	lung
2	chr2:32236400-32250800	Weak transcription	Spleen	Spleen
3	chr2:32236400-32264200	Weak transcription	Gastric	stomach
4	chr2:32236600-32237400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr2:32236600-32237400	Enhancers	Brain Substantia Nigra	brain
6	chr2:32236600-32237400	Flanking Active TSS	GM12878-XiMat	blood
7	chr2:32236600-32237400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr2:32236600-32238200	Weak transcription	Fetal Brain Female	brain
9	chr2:32236600-32243800	Weak transcription	Ovary	ovary
10	chr2:32236600-32244400	Weak transcription	Brain Germinal Matrix	brain
11	chr2:32236600-32245000	Weak transcription	Left Ventricle	heart
12	chr2:32236600-32245200	Weak transcription	Fetal Brain Male	brain
13	chr2:32236600-32253400	Weak transcription	Esophagus	oesophagus
14	chr2:32236600-32261000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:32236600-32263200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:32236600-32263800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:32236600-32263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr2:32236600-32263800	Weak transcription	Psoas Muscle	Psoas
19	chr2:32236600-32264200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:32236600-32264200	Weak transcription	Right Atrium	heart
21	chr2:32236600-32264200	Weak transcription	Right Ventricle	heart
22	chr2:32236800-32237400	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr2:32236800-32237400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr2:32236800-32237400	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr2:32236800-32237400	Enhancers	Primary B cells from peripheral blood	blood
26	chr2:32236800-32237400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr2:32236800-32237400	Enhancers	Hela-S3	cervix
28	chr2:32236800-32237400	Enhancers	NHDF-Ad	bronchial
29	chr2:32236800-32237800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr2:32236800-32237800	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr2:32236800-32238000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr2:32236800-32240000	Weak transcription	Fetal Intestine Large	intestine
33	chr2:32236800-32240600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr2:32236800-32240800	Weak transcription	Fetal Muscle Leg	muscle
35	chr2:32236800-32241000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr2:32236800-32241400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr2:32236800-32241400	Weak transcription	Adipose Nuclei	Adipose
38	chr2:32236800-32242400	Weak transcription	Placenta	Placenta
39	chr2:32236800-32242600	Weak transcription	Brain Anterior Caudate	brain
40	chr2:32236800-32242800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:32236800-32242800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr2:32236800-32242800	Weak transcription	Fetal Lung	lung
43	chr2:32236800-32242800	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr2:32236800-32242800	Weak transcription	Thymus	Thymus
45	chr2:32236800-32242800	Weak transcription	Osteobl	bone
46	chr2:32236800-32244600	Weak transcription	Colon Smooth Muscle	Colon
47	chr2:32236800-32245200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr2:32236800-32245200	Weak transcription	Aorta	Aorta
49	chr2:32236800-32245400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr2:32236800-32247800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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