Variant report

Variant	rs3769607
Chromosome Location	chr2:32233268-32233269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr2:32233257-32235605	HEK293-T-REx	kidney:	n/a	n/a
2	CBX3	chr2:32233249-32233764	K562	blood:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:32232898..32237970-chr2:32287390..32290443,5	K562	blood:
2	chr2:32233185..32238105-chr2:32388775..32395245,11	K562	blood:
3	chr2:32231133..32238127-chr2:32263164..32266706,7	MCF-7	breast:
4	chr2:32233242..32236257-chr2:32247330..32249765,3	MCF-7	breast:
5	chr2:32233050..32238839-chr2:32262715..32266551,10	MCF-7	breast:
6	chr2:32158032..32160777-chr2:32231295..32234289,2	K562	blood:
7	chr2:32210208..32213123-chr2:32231743..32234482,2	K562	blood:
8	chr2:32231239..32234526-chr2:32234585..32239142,5	MCF-7	breast:
9	chr2:32232071..32233742-chr2:32268777..32271589,2	MCF-7	breast:
10	chr2:32233077..32237611-chr2:32388376..32395245,10	K562	blood:

No data

Variant related genes	Relation type
ENSG00000271228	TF binding region
ENSG00000021574	Chromatin interaction
ENSG00000162959	Chromatin interaction
ENSG00000152683	Chromatin interaction
ENSG00000272716	Chromatin interaction
ENSG00000271228	Chromatin interaction
ENSG00000162961	Chromatin interaction

Extended variants
information (count: 164 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs1005460	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1011309	0.85[ASN][1000 genomes]
rs10153899	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10490357	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10490358	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10490359	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11124273	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11884169	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11887441	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11888094	0.88[EUR][1000 genomes]
rs11890763	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11893435	0.96[EUR][1000 genomes]
rs11897154	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11898765	0.80[EUR][1000 genomes]
rs11899296	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11901415	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11902241	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11903729	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs12712325	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12988908	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12990358	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12992916	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993413	0.83[EUR][1000 genomes]
rs12993808	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12994708	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12994869	0.82[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12997171	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13003695	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13005816	1.00[CEU][hapmap];0.93[CHD][hapmap];0.89[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs13006751	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13007025	0.89[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13013099	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13014501	0.89[EUR][1000 genomes]
rs13018592	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13021718	0.81[ASW][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];0.80[MKK][hapmap];0.88[TSI][hapmap];0.84[ASN][1000 genomes]
rs13022518	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022655	0.83[EUR][1000 genomes]
rs13022696	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13022719	1.00[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13024535	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13024644	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13028676	0.83[EUR][1000 genomes]
rs13034714	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13034933	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13409437	0.84[ASN][1000 genomes]
rs13414295	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1383023	0.88[EUR][1000 genomes]
rs160802	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs17011641	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011644	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17011673	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17011697	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011710	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];0.96[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011711	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011721	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17011722	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17011740	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011742	0.80[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.89[TSI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17766509	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17817607	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17818002	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1808112	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2064814	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2145038	0.82[EUR][1000 genomes]
rs221196	1.00[JPT][hapmap]
rs33998544	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34056419	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34077616	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34231321	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34246971	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34316760	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34321580	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34369001	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34432107	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34437462	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34457675	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34460762	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34492168	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34497289	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34540872	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34569213	0.96[EUR][1000 genomes]
rs34617455	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34645083	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34738692	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34776070	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34805211	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34897620	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34970173	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34973007	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35178826	0.84[ASN][1000 genomes]
rs35179884	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35262968	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35382589	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35397112	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35404750	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35502701	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35514510	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35631143	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35653492	0.81[EUR][1000 genomes]
rs35820518	0.84[EUR][1000 genomes]
rs36048738	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3754837	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3769614	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3795922	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3851309	1.00[JPT][hapmap]
rs56821465	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62142074	0.82[ASN][1000 genomes]
rs62142076	0.84[ASN][1000 genomes]
rs6543643	0.81[ASN][1000 genomes]
rs6543644	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66511526	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66522244	0.84[ASN][1000 genomes]
rs66735346	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66863308	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs66949767	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67048620	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6712798	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6718407	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6721692	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6729580	0.90[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67335141	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6733630	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6736930	0.83[EUR][1000 genomes]
rs6739654	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6746749	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67493880	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67517941	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67550529	0.81[ASN][1000 genomes]
rs67557317	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6755740	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6761760	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6761878	0.83[EUR][1000 genomes]
rs67780569	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67957236	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs68039196	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs68051012	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68076008	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71446026	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71446027	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71446035	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71446040	0.86[EUR][1000 genomes]
rs71446042	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72857279	0.88[EUR][1000 genomes]
rs72859088	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72860906	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72860941	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72860982	0.85[EUR][1000 genomes]
rs72861000	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7559329	0.93[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.88[ASN][1000 genomes]
rs7560472	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7560714	0.82[EUR][1000 genomes]
rs7562388	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7574910	0.82[ASW][hapmap];1.00[CEU][hapmap];0.93[CHD][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7577579	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7580118	0.93[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap]
rs7587341	0.86[EUR][1000 genomes]
rs7591270	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7598154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7601038	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7607030	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7607225	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs875167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3769607	CLIP4	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32168400-32233400	Weak transcription	Fetal Stomach	stomach
2	chr2:32191600-32234200	Weak transcription	Lung	lung
3	chr2:32202400-32233600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr2:32206600-32234000	Weak transcription	Stomach Mucosa	stomach
5	chr2:32223200-32233400	Weak transcription	HSMM	muscle
6	chr2:32223200-32233600	Weak transcription	Osteobl	bone
7	chr2:32223400-32234400	Weak transcription	Spleen	Spleen
8	chr2:32224200-32233600	Weak transcription	Thymus	Thymus
9	chr2:32225800-32234200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr2:32227800-32233600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:32228800-32233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:32229200-32234200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:32229200-32234200	Weak transcription	Esophagus	oesophagus
14	chr2:32229400-32233600	Enhancers	Primary T cells from cord blood	blood
15	chr2:32230000-32233800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr2:32230000-32233800	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr2:32230200-32233400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr2:32230400-32233400	Weak transcription	Right Atrium	heart
19	chr2:32230400-32233600	Enhancers	Primary B cells from cord blood	blood
20	chr2:32230400-32234000	Weak transcription	Psoas Muscle	Psoas
21	chr2:32230600-32233400	Enhancers	Duodenum Mucosa	Duodenum
22	chr2:32230600-32233400	Enhancers	A549	lung
23	chr2:32230800-32233600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:32230800-32233600	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr2:32230800-32234000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr2:32231000-32233400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr2:32231000-32233400	Flanking Active TSS	HepG2	liver
28	chr2:32231000-32233600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr2:32231000-32233800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr2:32231200-32233400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr2:32231200-32233600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr2:32231200-32233600	Weak transcription	Brain Substantia Nigra	brain
33	chr2:32231400-32233600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr2:32231400-32233600	Enhancers	Primary hematopoietic stem cells	blood
35	chr2:32231400-32233600	Weak transcription	Adipose Nuclei	Adipose
36	chr2:32231400-32233600	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr2:32231400-32233600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr2:32231400-32233800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr2:32231400-32234000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr2:32231800-32234000	Enhancers	Primary B cells from peripheral blood	blood
41	chr2:32231800-32234000	Weak transcription	Ovary	ovary
42	chr2:32232000-32233400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr2:32232000-32233400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr2:32232000-32233400	Enhancers	HMEC	breast
45	chr2:32232000-32233800	Enhancers	Rectal Mucosa Donor 31	rectum
46	chr2:32232000-32234200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr2:32232000-32234200	Weak transcription	Pancreas	Pancrea
48	chr2:32232200-32233600	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr2:32232200-32233600	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr2:32232200-32233800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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