Variant report

Variant	rs72857279
Chromosome Location	chr2:32053795-32053796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32048909..32051795-chr2:32053146..32054842,2	MCF-7	breast:

Extended variants
information (count: 173 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:170)

rs_ID	r²[population]
rs1005460	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1011309	0.90[ASN][1000 genomes]
rs10153899	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10490357	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10490358	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10490359	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11124267	0.84[EUR][1000 genomes]
rs11124273	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11681037	0.80[ASN][1000 genomes]
rs11883601	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11884169	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11885062	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11888094	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11890763	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11893435	0.87[EUR][1000 genomes]
rs11897154	0.88[EUR][1000 genomes]
rs11898765	0.84[EUR][1000 genomes]
rs11899296	0.88[ASN][1000 genomes]
rs11901415	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12712325	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12988908	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12990358	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12992916	0.88[EUR][1000 genomes]
rs12993413	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12993808	0.83[EUR][1000 genomes]
rs12994708	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12994869	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12997171	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12997994	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13001512	0.87[EUR][1000 genomes]
rs13003695	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13005816	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13006356	0.85[EUR][1000 genomes]
rs13006358	0.86[EUR][1000 genomes]
rs13006751	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13007025	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13013099	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13014501	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13018592	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13021718	0.88[ASN][1000 genomes]
rs13022518	0.86[EUR][1000 genomes]
rs13022655	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13022696	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13022719	0.84[EUR][1000 genomes]
rs13024535	0.91[EUR][1000 genomes]
rs13028676	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13034714	0.90[EUR][1000 genomes]
rs13034933	0.82[EUR][1000 genomes]
rs13409437	0.88[ASN][1000 genomes]
rs13414295	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1383023	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs160791	0.95[ASN][1000 genomes]
rs160802	0.88[ASN][1000 genomes]
rs160807	0.97[ASN][1000 genomes]
rs17011641	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17011644	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011673	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17011697	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011710	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011711	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17011721	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011722	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011740	0.90[EUR][1000 genomes]
rs17011742	0.82[EUR][1000 genomes]
rs17766509	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17817040	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17817607	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17818002	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1808112	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2007608	0.86[ASN][1000 genomes]
rs2064814	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs221198	0.93[ASN][1000 genomes]
rs223620	0.97[ASN][1000 genomes]
rs2366295	0.93[ASN][1000 genomes]
rs33998544	0.90[EUR][1000 genomes]
rs34056419	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34077616	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34091236	0.86[EUR][1000 genomes]
rs34231321	0.92[EUR][1000 genomes]
rs34246971	0.81[EUR][1000 genomes]
rs34316760	0.90[EUR][1000 genomes]
rs34321580	0.88[ASN][1000 genomes]
rs34369001	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34432107	0.88[EUR][1000 genomes]
rs34437462	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34460762	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34492168	0.90[EUR][1000 genomes]
rs34497289	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34509832	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34540872	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34569213	0.87[EUR][1000 genomes]
rs34617455	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34645083	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34687527	0.82[EUR][1000 genomes]
rs34738692	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34776070	0.88[EUR][1000 genomes]
rs34805211	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34893975	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34897620	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34970173	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34973007	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35178826	0.88[ASN][1000 genomes]
rs35179884	0.90[EUR][1000 genomes]
rs35262968	0.90[EUR][1000 genomes]
rs35382589	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35397112	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35404750	0.90[EUR][1000 genomes]
rs35439422	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35502701	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35514510	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35574090	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35631143	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35820518	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36048738	0.82[EUR][1000 genomes]
rs3754837	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3769607	0.88[EUR][1000 genomes]
rs3769614	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3795922	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56821465	0.90[EUR][1000 genomes]
rs57754448	0.82[EUR][1000 genomes]
rs62142074	0.87[ASN][1000 genomes]
rs62142076	0.88[ASN][1000 genomes]
rs6543643	0.91[ASN][1000 genomes]
rs6543644	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66511526	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66522244	0.88[ASN][1000 genomes]
rs66735346	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66863308	0.88[ASN][1000 genomes]
rs66949767	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67048620	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6718407	0.83[ASN][1000 genomes]
rs6721692	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6729580	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67335141	0.85[EUR][1000 genomes]
rs6733630	0.90[EUR][1000 genomes]
rs6736930	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6739654	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6746749	0.90[EUR][1000 genomes]
rs67493880	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67517941	0.86[EUR][1000 genomes]
rs67550529	0.86[ASN][1000 genomes]
rs67557317	0.90[EUR][1000 genomes]
rs6755740	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6761760	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6761878	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67780569	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67957236	0.91[EUR][1000 genomes]
rs68039196	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs68051012	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68076008	0.88[ASN][1000 genomes]
rs71446026	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71446027	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71446035	0.90[EUR][1000 genomes]
rs71446040	0.80[EUR][1000 genomes]
rs72859088	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72860906	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72860941	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72861000	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7559329	0.87[ASN][1000 genomes]
rs7560472	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7560714	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7562388	0.90[EUR][1000 genomes]
rs7574910	0.82[EUR][1000 genomes]
rs7577579	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7591270	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7598154	0.81[EUR][1000 genomes]
rs7601038	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7607030	0.82[EUR][1000 genomes]
rs7607225	0.93[EUR][1000 genomes]
rs875167	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32053400-32054600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:32053600-32054600	Enhancers	HSMM	muscle
3	chr2:32053600-32055000	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links