Variant report

Variant	rs2366295
Chromosome Location	chr2:32065251-32065252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32064343..32066158-chr2:32576935..32579070,2	K562	blood:

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1005460	0.85[ASN][1000 genomes]
rs1011309	0.85[ASN][1000 genomes]
rs10153899	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10490357	0.96[ASN][1000 genomes]
rs10490358	0.90[ASN][1000 genomes]
rs10490359	0.85[ASN][1000 genomes]
rs1090817	0.86[EUR][1000 genomes]
rs11124273	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11681037	0.84[EUR][1000 genomes]
rs11883601	0.83[ASN][1000 genomes]
rs11884169	0.83[ASN][1000 genomes]
rs11888094	0.87[ASN][1000 genomes]
rs11890763	0.85[ASN][1000 genomes]
rs11898765	0.91[AMR][1000 genomes]
rs11899296	0.84[ASN][1000 genomes]
rs11901415	0.85[ASN][1000 genomes]
rs12712325	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12988908	0.90[ASN][1000 genomes]
rs12990358	0.81[ASN][1000 genomes]
rs12993413	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12994708	0.85[ASN][1000 genomes]
rs12997171	0.90[ASN][1000 genomes]
rs13003695	0.88[ASN][1000 genomes]
rs13005816	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13006751	0.85[ASN][1000 genomes]
rs13007025	0.85[ASN][1000 genomes]
rs13013099	0.87[ASN][1000 genomes]
rs13014501	0.93[ASN][1000 genomes]
rs13018592	0.85[ASN][1000 genomes]
rs13021718	0.84[ASN][1000 genomes]
rs13022655	0.93[ASN][1000 genomes]
rs13022696	0.88[ASN][1000 genomes]
rs13028676	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13409437	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13414295	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1383023	0.93[ASN][1000 genomes]
rs160791	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs160802	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs160807	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17011641	0.96[ASN][1000 genomes]
rs17011644	0.88[ASN][1000 genomes]
rs17011673	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17011697	0.85[ASN][1000 genomes]
rs17011710	0.85[ASN][1000 genomes]
rs17011711	0.85[ASN][1000 genomes]
rs17011721	0.83[ASN][1000 genomes]
rs17011722	0.83[ASN][1000 genomes]
rs17766509	0.96[ASN][1000 genomes]
rs17817040	0.83[ASN][1000 genomes]
rs17817607	0.96[ASN][1000 genomes]
rs17818002	0.87[ASN][1000 genomes]
rs1808112	0.81[ASN][1000 genomes]
rs2007608	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2064814	0.87[ASN][1000 genomes]
rs221198	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs223620	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34056419	0.87[ASN][1000 genomes]
rs34077616	0.83[ASN][1000 genomes]
rs34321580	0.84[ASN][1000 genomes]
rs34369001	0.87[ASN][1000 genomes]
rs34437462	0.81[ASN][1000 genomes]
rs34497289	0.83[ASN][1000 genomes]
rs34540872	0.85[ASN][1000 genomes]
rs34617455	0.87[ASN][1000 genomes]
rs34645083	0.85[ASN][1000 genomes]
rs34738692	0.83[ASN][1000 genomes]
rs34805211	0.81[ASN][1000 genomes]
rs34893975	0.87[ASN][1000 genomes]
rs34897620	0.81[ASN][1000 genomes]
rs34970173	0.90[ASN][1000 genomes]
rs34973007	0.85[ASN][1000 genomes]
rs35178826	0.84[ASN][1000 genomes]
rs35382589	0.83[ASN][1000 genomes]
rs35397112	0.83[ASN][1000 genomes]
rs35502701	0.87[ASN][1000 genomes]
rs35514510	0.90[ASN][1000 genomes]
rs35631143	0.96[ASN][1000 genomes]
rs35820518	0.93[ASN][1000 genomes]
rs3754837	0.90[ASN][1000 genomes]
rs3769614	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3795922	0.85[ASN][1000 genomes]
rs62142074	0.83[ASN][1000 genomes]
rs62142076	0.84[ASN][1000 genomes]
rs6543643	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6543644	0.88[ASN][1000 genomes]
rs66511526	0.85[ASN][1000 genomes]
rs66522244	0.84[ASN][1000 genomes]
rs66735346	0.90[ASN][1000 genomes]
rs66863308	0.84[ASN][1000 genomes]
rs66949767	0.96[ASN][1000 genomes]
rs67048620	0.87[ASN][1000 genomes]
rs6721692	0.85[ASN][1000 genomes]
rs6729580	0.85[ASN][1000 genomes]
rs6736930	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6739654	0.90[ASN][1000 genomes]
rs67493880	0.83[ASN][1000 genomes]
rs67550529	0.82[ASN][1000 genomes]
rs6755740	0.81[ASN][1000 genomes]
rs6761760	0.96[ASN][1000 genomes]
rs6761878	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67780569	0.87[ASN][1000 genomes]
rs68039196	0.87[ASN][1000 genomes]
rs68051012	0.83[ASN][1000 genomes]
rs68076008	0.84[ASN][1000 genomes]
rs71446027	0.83[ASN][1000 genomes]
rs72857279	0.93[ASN][1000 genomes]
rs72859088	0.87[ASN][1000 genomes]
rs72860906	0.85[ASN][1000 genomes]
rs72860941	0.85[ASN][1000 genomes]
rs72861000	0.81[ASN][1000 genomes]
rs7559329	0.83[ASN][1000 genomes]
rs7560472	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7560714	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7567093	0.81[EUR][1000 genomes]
rs7577579	0.87[ASN][1000 genomes]
rs7591270	0.87[ASN][1000 genomes]
rs7601038	0.83[ASN][1000 genomes]
rs806590	0.82[EUR][1000 genomes]
rs806591	0.81[EUR][1000 genomes]
rs9789452	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32054400-32080000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:32054600-32067800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:32054600-32090400	Weak transcription	HSMM	muscle
4	chr2:32057200-32117200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:32063000-32092000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:32063600-32067800	Weak transcription	Liver	Liver
8	chr2:32064600-32065400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr2:32064600-32142400	Weak transcription	NHDF-Ad	bronchial
10	chr2:32065000-32067800	Weak transcription	Osteobl	bone
11	chr2:32065000-32084800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:32065200-32065400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr2:32065200-32066000	Weak transcription	A549	lung
14	chr2:32065200-32068400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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