Variant report

Variant	rs17011673
Chromosome Location	chr2:32112856-32112857
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32107476..32109627-chr2:32111254..32113960,2	MCF-7	breast:
2	chr2:32104256..32106356-chr2:32111358..32113038,2	K562	blood:
3	chr2:32112402..32115115-chr2:32387877..32390821,4	K562	blood:
4	chr2:32107738..32109583-chr2:32112343..32114053,2	K562	blood:
5	chr2:32111335..32113138-chr2:32233431..32236422,2	K562	blood:

Variant related genes	Relation type
ENSG00000162959	Chromatin interaction

Extended variants
information (count: 190 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:186)

rs_ID	r²[population]
rs1005460	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1011309	0.98[ASN][1000 genomes]
rs10153899	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10490357	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10490358	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10490359	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11124267	0.83[EUR][1000 genomes]
rs11124273	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11883601	0.92[EUR][1000 genomes]
rs11884169	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11885062	0.89[EUR][1000 genomes]
rs11887441	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs11888094	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11890763	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11893435	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11897154	0.91[EUR][1000 genomes]
rs11898765	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11899296	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11901415	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11902241	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11903729	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12712325	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12988908	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12990358	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12992916	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12993413	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12993808	0.85[EUR][1000 genomes]
rs12994708	0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12994869	0.82[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12997171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12997994	0.91[EUR][1000 genomes]
rs13001512	0.87[EUR][1000 genomes]
rs13003695	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13005816	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13006302	0.85[ASN][1000 genomes]
rs13006356	0.85[EUR][1000 genomes]
rs13006358	0.86[EUR][1000 genomes]
rs13006751	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13007025	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13013099	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13014501	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13018592	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13021718	0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.97[ASN][1000 genomes]
rs13022518	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13022655	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13022696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13022719	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.96[TSI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13024535	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13024644	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13027103	0.80[EUR][1000 genomes]
rs13028676	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13034714	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13034933	1.00[CEU][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs13409437	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13414295	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1383023	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs160791	0.87[ASN][1000 genomes]
rs160802	0.91[ASW][hapmap];0.90[JPT][hapmap];0.89[LWK][hapmap];0.90[MKK][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs160807	0.88[ASN][1000 genomes]
rs17011641	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17011644	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17011697	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011710	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011711	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17011721	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17011722	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17011740	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs17011742	1.00[CEU][hapmap];0.93[CHD][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes]
rs17766509	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17817040	0.91[EUR][1000 genomes]
rs17817607	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17818002	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808112	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2007608	0.89[ASN][1000 genomes]
rs2064814	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2145038	0.85[ASN][1000 genomes]
rs221196	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs221198	0.87[ASN][1000 genomes]
rs223620	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2366295	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs33998544	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34056419	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34077616	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34091236	0.88[EUR][1000 genomes]
rs34231321	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34246971	0.83[EUR][1000 genomes]
rs34316760	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34321580	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34369001	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34432107	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34437462	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34460762	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34492168	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34497289	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34509832	0.92[EUR][1000 genomes]
rs34540872	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34569213	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34617455	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34645083	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34687527	0.82[EUR][1000 genomes]
rs34738692	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34776070	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34805211	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34893975	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34897620	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34970173	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34973007	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35178826	0.97[ASN][1000 genomes]
rs35179884	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35262968	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35382589	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35397112	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35404750	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35439422	0.88[EUR][1000 genomes]
rs35502701	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35514510	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35574090	0.91[EUR][1000 genomes]
rs35631143	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35653492	0.87[ASN][1000 genomes]
rs35820518	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36048738	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3754837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3769607	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3769614	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3795922	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56821465	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57754448	0.82[EUR][1000 genomes]
rs60954094	0.85[ASN][1000 genomes]
rs62142074	0.96[ASN][1000 genomes]
rs62142076	0.97[ASN][1000 genomes]
rs6543643	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6543644	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66511526	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66522244	0.97[ASN][1000 genomes]
rs66735346	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66863308	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66949767	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67048620	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6712798	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6718407	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6721692	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6729580	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67335141	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6733630	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6736930	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6739654	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6746749	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67493880	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67517941	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67550529	0.94[ASN][1000 genomes]
rs67557317	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6755740	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6761760	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6761878	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67780569	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67957236	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs68039196	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs68051012	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68076008	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71446026	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71446027	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71446035	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71446040	0.83[EUR][1000 genomes]
rs71446042	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71446044	0.85[ASN][1000 genomes]
rs71446045	0.85[ASN][1000 genomes]
rs72857279	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72859088	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72860906	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72860941	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72860982	0.80[ASN][1000 genomes]
rs72861000	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7559329	0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.95[ASN][1000 genomes]
rs7560472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7560714	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7562388	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7574910	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7577579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7587341	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7589579	0.80[EUR][1000 genomes]
rs7591270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598154	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7601038	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7607030	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7607225	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs875167	1.00[CEU][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv873777	chr2:32019747-32197123	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	esv1801791	chr2:32077901-32120807	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17011673	SLC30A6	cis	parietal	SCAN
rs17011673	CLIP4	cis	cerebellum	SCAN

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32057200-32117200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:32061600-32172800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr2:32064600-32142400	Weak transcription	NHDF-Ad	bronchial
4	chr2:32065400-32123000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:32068000-32121400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr2:32068400-32115400	Weak transcription	NHEK	skin
7	chr2:32068400-32121400	Weak transcription	Fetal Brain Female	brain
8	chr2:32069000-32116600	Weak transcription	Osteobl	bone
9	chr2:32071000-32115400	Weak transcription	Placenta	Placenta
10	chr2:32071800-32116000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:32074600-32127000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr2:32075800-32170000	Weak transcription	Aorta	Aorta
13	chr2:32077200-32115000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:32077200-32116400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr2:32083000-32115200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:32086200-32127000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr2:32086600-32174400	Weak transcription	NHLF	lung
18	chr2:32087600-32115200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr2:32088000-32116000	Weak transcription	Adipose Nuclei	Adipose
20	chr2:32088000-32157600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr2:32088200-32127600	Weak transcription	K562	blood
22	chr2:32089400-32160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr2:32090000-32116600	Weak transcription	NH-A	brain
24	chr2:32090200-32116000	Weak transcription	Dnd41	blood
25	chr2:32090800-32116000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr2:32092400-32116400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr2:32093000-32122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr2:32099600-32193000	Weak transcription	Hela-S3	cervix
29	chr2:32100800-32147800	Weak transcription	Spleen	Spleen
30	chr2:32101200-32123600	Weak transcription	HUVEC	blood vessel
31	chr2:32101600-32127000	Weak transcription	Brain Hippocampus Middle	brain
32	chr2:32102600-32115600	Weak transcription	HSMMtube	muscle
33	chr2:32103200-32133600	Weak transcription	Brain Germinal Matrix	brain
34	chr2:32103600-32115800	Weak transcription	Psoas Muscle	Psoas
35	chr2:32103600-32125800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr2:32103800-32115800	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr2:32104200-32115600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr2:32104600-32113200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr2:32104600-32123600	Weak transcription	Fetal Kidney	kidney
40	chr2:32104600-32131600	Weak transcription	Fetal Heart	heart
41	chr2:32105000-32127000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr2:32105200-32115800	Weak transcription	HMEC	breast
43	chr2:32105400-32146600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:32107000-32115800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr2:32107000-32115800	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:32107200-32113000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr2:32107200-32115200	Weak transcription	Fetal Thymus	thymus
48	chr2:32107200-32115600	Weak transcription	Liver	Liver
49	chr2:32107200-32115600	Weak transcription	Fetal Intestine Large	intestine
50	chr2:32107200-32123600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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