Variant report

Variant	rs34509832
Chromosome Location	chr2:31983371-31983372
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1005460	0.83[EUR][1000 genomes]
rs10153899	0.85[EUR][1000 genomes]
rs10204002	0.80[EUR][1000 genomes]
rs10490357	0.92[EUR][1000 genomes]
rs10490358	0.93[EUR][1000 genomes]
rs10490359	0.92[EUR][1000 genomes]
rs11124267	0.91[EUR][1000 genomes]
rs11124273	0.86[EUR][1000 genomes]
rs11883601	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11884169	0.91[EUR][1000 genomes]
rs11885062	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11888094	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11890763	0.92[EUR][1000 genomes]
rs11898765	0.81[EUR][1000 genomes]
rs11901415	0.92[EUR][1000 genomes]
rs12712325	0.85[EUR][1000 genomes]
rs12988908	0.92[EUR][1000 genomes]
rs12993413	0.84[EUR][1000 genomes]
rs12993808	0.80[EUR][1000 genomes]
rs12994708	0.93[EUR][1000 genomes]
rs12997171	0.91[EUR][1000 genomes]
rs12997994	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13001512	0.95[EUR][1000 genomes]
rs13003695	0.87[EUR][1000 genomes]
rs13005816	0.86[EUR][1000 genomes]
rs13006356	0.92[EUR][1000 genomes]
rs13006358	0.93[EUR][1000 genomes]
rs13006751	0.93[EUR][1000 genomes]
rs13007025	0.91[EUR][1000 genomes]
rs13013099	0.92[EUR][1000 genomes]
rs13014501	0.91[EUR][1000 genomes]
rs13018592	0.83[EUR][1000 genomes]
rs13022655	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13022696	0.91[EUR][1000 genomes]
rs13022719	0.82[EUR][1000 genomes]
rs13024535	0.88[EUR][1000 genomes]
rs13027103	0.85[EUR][1000 genomes]
rs13028676	0.84[EUR][1000 genomes]
rs13034714	0.87[EUR][1000 genomes]
rs13395648	0.82[EUR][1000 genomes]
rs13414295	0.85[EUR][1000 genomes]
rs1383023	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs160791	0.80[AMR][1000 genomes]
rs160807	0.80[AMR][1000 genomes]
rs17011641	0.92[EUR][1000 genomes]
rs17011644	0.92[EUR][1000 genomes]
rs17011673	0.92[EUR][1000 genomes]
rs17011697	0.93[EUR][1000 genomes]
rs17011710	0.93[EUR][1000 genomes]
rs17011711	0.93[EUR][1000 genomes]
rs17011721	0.83[EUR][1000 genomes]
rs17011722	0.91[EUR][1000 genomes]
rs17766509	0.91[EUR][1000 genomes]
rs17817040	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17817607	0.91[EUR][1000 genomes]
rs17818002	0.93[EUR][1000 genomes]
rs2064814	0.92[EUR][1000 genomes]
rs223620	0.80[AMR][1000 genomes]
rs33998544	0.87[EUR][1000 genomes]
rs34056419	0.92[EUR][1000 genomes]
rs34077616	0.91[EUR][1000 genomes]
rs34091236	0.93[EUR][1000 genomes]
rs34124115	0.84[EUR][1000 genomes]
rs34231321	0.89[EUR][1000 genomes]
rs34316760	0.87[EUR][1000 genomes]
rs34369001	0.92[EUR][1000 genomes]
rs34492168	0.87[EUR][1000 genomes]
rs34540872	0.92[EUR][1000 genomes]
rs34617455	0.92[EUR][1000 genomes]
rs34645083	0.93[EUR][1000 genomes]
rs34687527	0.90[EUR][1000 genomes]
rs34738692	0.91[EUR][1000 genomes]
rs34776070	0.85[EUR][1000 genomes]
rs34805211	0.95[EUR][1000 genomes]
rs34893975	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34970173	0.92[EUR][1000 genomes]
rs34973007	0.92[EUR][1000 genomes]
rs35118236	0.83[EUR][1000 genomes]
rs35179884	0.87[EUR][1000 genomes]
rs35262968	0.87[EUR][1000 genomes]
rs35382589	0.91[EUR][1000 genomes]
rs35397112	0.89[EUR][1000 genomes]
rs35404750	0.87[EUR][1000 genomes]
rs35439422	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35502701	0.92[EUR][1000 genomes]
rs35514510	0.89[EUR][1000 genomes]
rs35574090	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35631143	0.91[EUR][1000 genomes]
rs35820518	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3754837	0.93[EUR][1000 genomes]
rs3769614	0.84[EUR][1000 genomes]
rs3795922	0.83[EUR][1000 genomes]
rs3819844	0.82[EUR][1000 genomes]
rs479847	0.82[EUR][1000 genomes]
rs56821465	0.87[EUR][1000 genomes]
rs57754448	0.90[EUR][1000 genomes]
rs6543644	0.87[EUR][1000 genomes]
rs66511526	0.92[EUR][1000 genomes]
rs66735346	0.89[EUR][1000 genomes]
rs66949767	0.92[EUR][1000 genomes]
rs67048620	0.92[EUR][1000 genomes]
rs6721692	0.93[EUR][1000 genomes]
rs6729580	0.92[EUR][1000 genomes]
rs67335141	0.82[EUR][1000 genomes]
rs6733630	0.87[EUR][1000 genomes]
rs6736930	0.84[EUR][1000 genomes]
rs6739654	0.91[EUR][1000 genomes]
rs6746749	0.87[EUR][1000 genomes]
rs67493880	0.83[EUR][1000 genomes]
rs67557317	0.87[EUR][1000 genomes]
rs6761760	0.91[EUR][1000 genomes]
rs6761878	0.84[EUR][1000 genomes]
rs67780569	0.92[EUR][1000 genomes]
rs67957236	0.88[EUR][1000 genomes]
rs68039196	0.91[EUR][1000 genomes]
rs68051012	0.95[EUR][1000 genomes]
rs71446026	0.82[EUR][1000 genomes]
rs71446027	0.92[EUR][1000 genomes]
rs71446035	0.87[EUR][1000 genomes]
rs72857279	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72859088	0.92[EUR][1000 genomes]
rs72860906	0.93[EUR][1000 genomes]
rs72860941	0.91[EUR][1000 genomes]
rs7560472	0.83[EUR][1000 genomes]
rs7560714	0.83[EUR][1000 genomes]
rs7577579	0.92[EUR][1000 genomes]
rs7589579	0.85[EUR][1000 genomes]
rs7591270	0.89[EUR][1000 genomes]
rs7594951	0.82[EUR][1000 genomes]
rs7607225	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1015021	chr2:31972738-32030696	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3339157	chr2:31980448-31984646	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31982000-31983800	Enhancers	HepG2	liver
2	chr2:31982800-31983600	Enhancers	Fetal Intestine Large	intestine

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