Variant report

Variant	rs34124115
Chromosome Location	chr2:31892271-31892272
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10204002	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1090817	1.00[ASN][1000 genomes]
rs11124267	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11883601	0.84[EUR][1000 genomes]
rs11885062	0.82[EUR][1000 genomes]
rs11888094	0.84[EUR][1000 genomes]
rs12712320	0.84[EUR][1000 genomes]
rs12997994	0.86[EUR][1000 genomes]
rs13001512	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13006356	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13006358	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13014501	0.81[EUR][1000 genomes]
rs13027103	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395648	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13432696	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1383023	0.82[EUR][1000 genomes]
rs17817040	0.86[EUR][1000 genomes]
rs28383032	0.81[EUR][1000 genomes]
rs34091236	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34509832	0.84[EUR][1000 genomes]
rs34687527	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34893975	0.84[EUR][1000 genomes]
rs35118236	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439422	0.83[EUR][1000 genomes]
rs35574090	0.86[EUR][1000 genomes]
rs35631143	0.81[EUR][1000 genomes]
rs3754837	0.81[EUR][1000 genomes]
rs3754838	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3819844	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141419	0.82[EUR][1000 genomes]
rs479847	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4952227	0.94[ASN][1000 genomes]
rs519704	0.90[ASN][1000 genomes]
rs57754448	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6761760	0.81[EUR][1000 genomes]
rs7562326	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7563475	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567093	1.00[ASN][1000 genomes]
rs7589579	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594951	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7599086	0.83[EUR][1000 genomes]
rs806587	0.94[ASN][1000 genomes]
rs806590	0.97[ASN][1000 genomes]
rs806591	0.90[ASN][1000 genomes]
rs806592	0.82[ASN][1000 genomes]
rs9789452	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31890800-31892800	Enhancers	Liver	Liver
2	chr2:31891400-31892400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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