Variant report

Variant	rs806592
Chromosome Location	chr2:31933889-31933890
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10490358	0.89[JPT][hapmap]
rs1090817	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11124267	0.82[ASN][1000 genomes]
rs11690596	0.85[CHB][hapmap]
rs11889731	0.85[CHB][hapmap]
rs11890763	0.89[JPT][hapmap]
rs11902241	0.90[JPT][hapmap]
rs12997171	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs13001512	0.83[ASN][1000 genomes]
rs13005816	0.85[CHB][hapmap];0.87[YRI][hapmap]
rs13006356	0.82[ASN][1000 genomes]
rs13006358	0.83[ASN][1000 genomes]
rs13022696	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs13024644	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs13027103	0.82[ASN][1000 genomes]
rs13395648	0.85[CHB][hapmap]
rs1383023	0.89[JPT][hapmap]
rs17011453	0.85[CHB][hapmap]
rs17011673	0.85[CHB][hapmap];0.89[JPT][hapmap];0.80[YRI][hapmap]
rs17818002	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs1884722	0.85[CHB][hapmap]
rs221196	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap]
rs223620	0.85[CHB][hapmap];0.89[JPT][hapmap];0.87[YRI][hapmap]
rs2268794	0.85[CHB][hapmap]
rs2281546	0.85[CHB][hapmap]
rs34091236	0.82[ASN][1000 genomes]
rs34124115	0.82[ASN][1000 genomes]
rs34540872	0.89[JPT][hapmap]
rs34687527	0.81[ASN][1000 genomes]
rs35118236	0.82[ASN][1000 genomes]
rs3731586	0.85[CHB][hapmap]
rs3754837	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs3754838	0.85[CHB][hapmap]
rs6543634	0.85[CHB][hapmap]
rs6543644	0.90[JPT][hapmap]
rs7560472	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[YRI][hapmap]
rs7562326	0.85[CHB][hapmap]
rs7563475	0.83[ASN][1000 genomes]
rs7567093	0.82[ASN][1000 genomes]
rs7571644	0.85[CHB][hapmap]
rs7577579	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs7589579	0.82[ASN][1000 genomes]
rs7591270	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs7594951	0.85[CHB][hapmap]
rs806587	0.82[ASN][1000 genomes]
rs806590	0.84[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs806591	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs9332975	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31933600-31935400	Active TSS	Liver	Liver

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