Variant report

Variant	rs34091236
Chromosome Location	chr2:31901461-31901462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10204002	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10490357	0.88[EUR][1000 genomes]
rs10490358	0.87[EUR][1000 genomes]
rs1090817	1.00[ASN][1000 genomes]
rs11124267	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11883601	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11885062	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11888094	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12712320	0.83[EUR][1000 genomes]
rs12988908	0.86[EUR][1000 genomes]
rs12993413	0.80[EUR][1000 genomes]
rs12997171	0.87[EUR][1000 genomes]
rs12997994	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13001512	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13003695	0.86[EUR][1000 genomes]
rs13005816	0.80[EUR][1000 genomes]
rs13006356	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13006358	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13014501	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13022655	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13022696	0.87[EUR][1000 genomes]
rs13027103	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028676	0.80[EUR][1000 genomes]
rs13395648	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13432696	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1383023	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011641	0.88[EUR][1000 genomes]
rs17011644	0.86[EUR][1000 genomes]
rs17011673	0.88[EUR][1000 genomes]
rs17766509	0.87[EUR][1000 genomes]
rs17817040	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17817607	0.87[EUR][1000 genomes]
rs17818002	0.87[EUR][1000 genomes]
rs2064814	0.88[EUR][1000 genomes]
rs34056419	0.88[EUR][1000 genomes]
rs34124115	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34509832	0.93[EUR][1000 genomes]
rs34540872	0.88[EUR][1000 genomes]
rs34687527	0.87[AFR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34805211	0.88[EUR][1000 genomes]
rs34893975	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34970173	0.85[EUR][1000 genomes]
rs34973007	0.88[EUR][1000 genomes]
rs35118236	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35439422	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35514510	0.88[EUR][1000 genomes]
rs35574090	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35631143	0.89[EUR][1000 genomes]
rs35820518	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3754837	0.89[EUR][1000 genomes]
rs3754838	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3769614	0.80[EUR][1000 genomes]
rs3819844	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4141419	0.81[EUR][1000 genomes]
rs479847	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4952227	0.94[ASN][1000 genomes]
rs519704	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57754448	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6543644	0.86[EUR][1000 genomes]
rs66511526	0.88[EUR][1000 genomes]
rs66735346	0.88[EUR][1000 genomes]
rs66949767	0.88[EUR][1000 genomes]
rs6736930	0.80[EUR][1000 genomes]
rs6739654	0.87[EUR][1000 genomes]
rs6761760	0.89[EUR][1000 genomes]
rs6761878	0.80[EUR][1000 genomes]
rs67780569	0.88[EUR][1000 genomes]
rs68039196	0.87[EUR][1000 genomes]
rs71446026	0.80[EUR][1000 genomes]
rs72857279	0.86[EUR][1000 genomes]
rs7562326	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7563475	0.95[ASN][1000 genomes]
rs7567093	1.00[ASN][1000 genomes]
rs7577579	0.88[EUR][1000 genomes]
rs7589579	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591270	0.88[EUR][1000 genomes]
rs7594951	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7599086	0.82[EUR][1000 genomes]
rs806587	0.94[ASN][1000 genomes]
rs806590	0.97[ASN][1000 genomes]
rs806591	0.90[ASN][1000 genomes]
rs806592	0.82[ASN][1000 genomes]
rs9789452	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31899400-31902400	ZNF genes & repeats	Liver	Liver
2	chr2:31900600-31901600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:31900600-31901800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:31901200-31901600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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