Variant report

Variant	rs35118236
Chromosome Location	chr2:31883632-31883633
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10204002	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1090817	1.00[ASN][1000 genomes]
rs11124267	0.94[ASN][1000 genomes]
rs11883601	0.83[EUR][1000 genomes]
rs11885062	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11888094	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12997994	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13001512	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13006356	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13006358	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13022655	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13027103	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13395648	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13432696	0.87[ASN][1000 genomes]
rs1383023	0.80[EUR][1000 genomes]
rs17817040	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34091236	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34124115	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34509832	0.83[EUR][1000 genomes]
rs34687527	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs34893975	0.83[EUR][1000 genomes]
rs35439422	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35574090	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35820518	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3754838	0.93[ASN][1000 genomes]
rs3819844	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs479847	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4952227	0.94[ASN][1000 genomes]
rs519704	0.90[ASN][1000 genomes]
rs57754448	0.91[ASN][1000 genomes]
rs7562326	0.88[ASN][1000 genomes]
rs7563475	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7567093	1.00[ASN][1000 genomes]
rs7589579	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7594951	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs806587	0.94[ASN][1000 genomes]
rs806590	0.97[ASN][1000 genomes]
rs806591	0.90[ASN][1000 genomes]
rs806592	0.82[ASN][1000 genomes]
rs9789452	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31882000-31885400	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links