Variant report

Variant	rs1090817
Chromosome Location	chr2:31901469-31901470
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10204002	0.88[ASN][1000 genomes]
rs1042578	0.85[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10490358	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11124267	0.94[ASN][1000 genomes]
rs11681037	0.81[EUR][1000 genomes]
rs11690596	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs11889731	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs11892064	0.87[CEU][hapmap];0.86[CHB][hapmap]
rs11902241	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12997171	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13001512	0.98[ASN][1000 genomes]
rs13006356	0.97[ASN][1000 genomes]
rs13006358	0.98[ASN][1000 genomes]
rs13022696	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13024644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13027103	1.00[ASN][1000 genomes]
rs13028676	0.83[AMR][1000 genomes]
rs13385895	0.81[AFR][1000 genomes]
rs13395648	1.00[CHB][hapmap];0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs13409437	0.86[EUR][1000 genomes]
rs13432696	0.87[ASN][1000 genomes]
rs1383023	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs160791	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs160802	0.86[EUR][1000 genomes]
rs160807	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17011453	0.87[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs1884722	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs221196	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs223620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs223622	0.88[YRI][hapmap]
rs2268794	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2281546	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs2366295	0.86[EUR][1000 genomes]
rs34091236	1.00[ASN][1000 genomes]
rs34124115	1.00[ASN][1000 genomes]
rs34687527	0.93[ASN][1000 genomes]
rs35118236	1.00[ASN][1000 genomes]
rs3731586	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs3754837	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3754838	1.00[CHB][hapmap];0.81[JPT][hapmap];0.93[ASN][1000 genomes]
rs3819844	0.87[ASN][1000 genomes]
rs479847	0.88[ASN][1000 genomes]
rs4952227	0.94[ASN][1000 genomes]
rs519704	0.90[ASN][1000 genomes]
rs57754448	0.91[ASN][1000 genomes]
rs6543634	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs6543643	0.83[EUR][1000 genomes]
rs7560472	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs7562326	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs7563475	0.95[ASN][1000 genomes]
rs7567093	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571644	1.00[CHB][hapmap]
rs7589579	1.00[ASN][1000 genomes]
rs7594951	1.00[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs806587	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs806590	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs806591	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs806592	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9332975	1.00[CHB][hapmap];0.81[JPT][hapmap]
rs9789452	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1002988	chr2:31767131-31996924	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3376782	chr2:31861607-32046180	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1003376	chr2:31889934-32022595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31899400-31902400	ZNF genes & repeats	Liver	Liver
2	chr2:31900600-31901600	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr2:31900600-31901800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr2:31901200-31901600	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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