Variant report

Variant	rs34316760
Chromosome Location	chr2:32204138-32204139
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:32202781..32206139-chr2:32208630..32212178,4	MCF-7	breast:
2	chr2:32202030..32205016-chr2:32233505..32236223,2	MCF-7	breast:
3	chr2:32186004..32187856-chr2:32201894..32204650,2	K562	blood:
4	chr2:32204041..32206611-chr2:32221999..32224174,3	K562	blood:

Variant related genes	Relation type
ENSG00000162959	Chromatin interaction

Extended variants
information (count: 166 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1005460	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1011309	0.86[ASN][1000 genomes]
rs10153899	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10490357	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10490358	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10490359	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11124273	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11883601	0.87[EUR][1000 genomes]
rs11884169	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11888094	0.89[EUR][1000 genomes]
rs11890763	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11893435	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11897154	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11898765	0.81[EUR][1000 genomes]
rs11899296	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11901415	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11903729	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12712325	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12988908	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12990358	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12992916	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12993413	0.84[EUR][1000 genomes]
rs12993808	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12994708	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12994869	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12997171	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12997994	0.86[EUR][1000 genomes]
rs13003695	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13005816	0.84[EUR][1000 genomes]
rs13006751	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13007025	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13013099	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13014501	0.91[EUR][1000 genomes]
rs13018592	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13021718	0.85[ASN][1000 genomes]
rs13022518	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13022655	0.84[EUR][1000 genomes]
rs13022696	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13022719	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13024535	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13028676	0.84[EUR][1000 genomes]
rs13034714	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13034933	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13409437	0.85[ASN][1000 genomes]
rs13414295	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1383023	0.89[EUR][1000 genomes]
rs160802	0.85[ASN][1000 genomes]
rs17011641	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17011644	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17011673	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011697	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17011710	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17011711	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17011721	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17011722	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17011740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17011742	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17766509	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17817040	0.86[EUR][1000 genomes]
rs17817607	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17818002	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1808112	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2064814	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2145038	0.83[EUR][1000 genomes]
rs33998544	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34056419	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34077616	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34231321	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34246971	0.88[EUR][1000 genomes]
rs34321580	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34369001	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34432107	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34437462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34457675	0.84[EUR][1000 genomes]
rs34460762	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34492168	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34497289	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34509832	0.87[EUR][1000 genomes]
rs34540872	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34569213	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34617455	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34645083	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34738692	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34776070	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34805211	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34893975	0.87[EUR][1000 genomes]
rs34897620	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34970173	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34973007	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35178826	0.85[ASN][1000 genomes]
rs35179884	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35262968	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35382589	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35397112	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35404750	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35502701	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35514510	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35574090	0.86[EUR][1000 genomes]
rs35631143	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35653492	0.82[EUR][1000 genomes]
rs35820518	0.85[EUR][1000 genomes]
rs36048738	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3754837	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3769607	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3769614	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3795922	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56821465	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60954094	0.94[ASN][1000 genomes]
rs62142074	0.84[ASN][1000 genomes]
rs62142076	0.85[ASN][1000 genomes]
rs6543643	0.82[ASN][1000 genomes]
rs6543644	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6543645	0.89[ASN][1000 genomes]
rs66511526	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs66522244	0.85[ASN][1000 genomes]
rs66735346	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66863308	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66949767	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67048620	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6712798	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6718407	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6721692	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6729580	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67335141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6733630	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6736930	0.84[EUR][1000 genomes]
rs6739654	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6746749	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67493880	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67517941	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67550529	0.83[ASN][1000 genomes]
rs67557317	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6755740	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6761760	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6761878	0.84[EUR][1000 genomes]
rs67780569	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67957236	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68039196	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs68051012	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs68076008	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71446026	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs71446027	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71446035	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71446040	0.87[EUR][1000 genomes]
rs71446042	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72857279	0.90[EUR][1000 genomes]
rs72859088	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72860906	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72860941	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72860982	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72861000	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7559329	0.89[ASN][1000 genomes]
rs7560472	0.83[EUR][1000 genomes]
rs7560714	0.83[EUR][1000 genomes]
rs7562388	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7574910	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577579	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7587341	0.88[EUR][1000 genomes]
rs7591270	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7598154	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7601038	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7607030	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7607225	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs875167	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32117000-32205200	Weak transcription	NH-A	brain
2	chr2:32168400-32205200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:32168400-32205800	Weak transcription	Fetal Lung	lung
4	chr2:32168400-32205800	Weak transcription	Thymus	Thymus
5	chr2:32168400-32212200	Weak transcription	Esophagus	oesophagus
6	chr2:32168400-32233400	Weak transcription	Fetal Stomach	stomach
7	chr2:32171000-32227600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:32183600-32205400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr2:32183600-32205400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:32184800-32205200	Weak transcription	Small Intestine	intestine
11	chr2:32185200-32209600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr2:32186400-32205200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr2:32186600-32212200	Weak transcription	HMEC	breast
14	chr2:32186800-32205200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr2:32186800-32208000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:32187000-32211400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:32187200-32212000	Weak transcription	Ovary	ovary
18	chr2:32187400-32205200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr2:32187400-32210600	Weak transcription	Aorta	Aorta
20	chr2:32188000-32205400	Weak transcription	Primary T cells from cord blood	blood
21	chr2:32188200-32205200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr2:32188200-32205200	Weak transcription	Left Ventricle	heart
23	chr2:32188200-32205800	Weak transcription	Fetal Thymus	thymus
24	chr2:32188400-32205200	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr2:32188400-32205600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:32189400-32206000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr2:32190000-32205600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:32191600-32234200	Weak transcription	Lung	lung
29	chr2:32191800-32205200	Weak transcription	Primary B cells from cord blood	blood
30	chr2:32193600-32206400	Weak transcription	Hela-S3	cervix
31	chr2:32193600-32212200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr2:32193600-32212800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:32193800-32205600	Weak transcription	K562	blood
34	chr2:32193800-32205800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:32193800-32209400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr2:32195200-32210400	Weak transcription	Fetal Intestine Small	intestine
37	chr2:32195800-32205600	Weak transcription	A549	lung
38	chr2:32199000-32204200	Weak transcription	Primary B cells from peripheral blood	blood
39	chr2:32199000-32204800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr2:32199400-32204800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr2:32199600-32205200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr2:32199600-32205600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr2:32201400-32204200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr2:32201600-32205800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr2:32202400-32233600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr2:32203800-32205200	Weak transcription	Psoas Muscle	Psoas
47	chr2:32203800-32223000	Weak transcription	Spleen	Spleen
48	chr2:32204000-32205200	Weak transcription	Primary T helper cells PMA-I stimulated	--

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