Variant report

Variant	rs71446040
Chromosome Location	chr2:32284770-32284771
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:32284338..32286007-chr2:32389248..32391460,2	K562	blood:
2	chr2:32036686..32038656-chr2:32282534..32285031,2	K562	blood:
3	chr2:32277442..32284855-chr2:32286195..32291161,9	K562	blood:
4	chr2:32277338..32280133-chr2:32283297..32285674,2	K562	blood:
5	chr2:32263856..32265791-chr2:32283632..32285684,2	K562	blood:
6	chr2:32263267..32267327-chr2:32283931..32290396,13	MCF-7	breast:
7	chr2:32264100..32265746-chr2:32283485..32285341,2	K562	blood:
8	chr2:32271373..32274360-chr2:32283012..32285259,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000152683	Chromatin interaction
ENSG00000162961	Chromatin interaction
ENSG00000021574	Chromatin interaction
ENSG00000272716	Chromatin interaction

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10490357	0.83[EUR][1000 genomes]
rs10490358	0.81[EUR][1000 genomes]
rs10490359	0.85[EUR][1000 genomes]
rs11884169	0.84[EUR][1000 genomes]
rs11890763	0.83[EUR][1000 genomes]
rs11893435	0.85[EUR][1000 genomes]
rs11897154	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11901415	0.83[EUR][1000 genomes]
rs12988908	0.80[EUR][1000 genomes]
rs12992916	0.89[EUR][1000 genomes]
rs12993808	0.81[EUR][1000 genomes]
rs12994708	0.84[EUR][1000 genomes]
rs12994869	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12997171	0.81[EUR][1000 genomes]
rs13003695	0.80[EUR][1000 genomes]
rs13006751	0.84[EUR][1000 genomes]
rs13007025	0.86[EUR][1000 genomes]
rs13013099	0.83[EUR][1000 genomes]
rs13014501	0.84[EUR][1000 genomes]
rs13022518	0.84[EUR][1000 genomes]
rs13022696	0.81[EUR][1000 genomes]
rs13022719	0.85[EUR][1000 genomes]
rs13024535	0.84[EUR][1000 genomes]
rs13034714	0.90[EUR][1000 genomes]
rs17011641	0.83[EUR][1000 genomes]
rs17011644	0.80[EUR][1000 genomes]
rs17011673	0.83[EUR][1000 genomes]
rs17011697	0.84[EUR][1000 genomes]
rs17011710	0.81[EUR][1000 genomes]
rs17011711	0.84[EUR][1000 genomes]
rs17011722	0.86[EUR][1000 genomes]
rs17011740	0.87[EUR][1000 genomes]
rs17766509	0.81[EUR][1000 genomes]
rs17817607	0.81[EUR][1000 genomes]
rs17818002	0.81[EUR][1000 genomes]
rs1808112	0.87[EUR][1000 genomes]
rs2064814	0.83[EUR][1000 genomes]
rs2145038	0.81[EUR][1000 genomes]
rs33998544	0.90[EUR][1000 genomes]
rs34056419	0.83[EUR][1000 genomes]
rs34077616	0.86[EUR][1000 genomes]
rs34231321	0.85[EUR][1000 genomes]
rs34246971	0.81[EUR][1000 genomes]
rs34316760	0.87[EUR][1000 genomes]
rs34369001	0.83[EUR][1000 genomes]
rs34432107	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs34437462	0.87[EUR][1000 genomes]
rs34460762	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34492168	0.87[EUR][1000 genomes]
rs34497289	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34540872	0.83[EUR][1000 genomes]
rs34569213	0.85[EUR][1000 genomes]
rs34617455	0.83[EUR][1000 genomes]
rs34645083	0.84[EUR][1000 genomes]
rs34738692	0.86[EUR][1000 genomes]
rs34776070	0.86[EUR][1000 genomes]
rs34805211	0.83[EUR][1000 genomes]
rs34897620	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34970173	0.80[EUR][1000 genomes]
rs34973007	0.83[EUR][1000 genomes]
rs35179884	0.87[EUR][1000 genomes]
rs35262968	0.87[EUR][1000 genomes]
rs35382589	0.86[EUR][1000 genomes]
rs35397112	0.87[EUR][1000 genomes]
rs35404750	0.87[EUR][1000 genomes]
rs35502701	0.83[EUR][1000 genomes]
rs35514510	0.83[EUR][1000 genomes]
rs35631143	0.84[EUR][1000 genomes]
rs35653492	0.80[EUR][1000 genomes]
rs3754837	0.84[EUR][1000 genomes]
rs3769607	0.86[EUR][1000 genomes]
rs56821465	0.87[EUR][1000 genomes]
rs6543644	0.80[EUR][1000 genomes]
rs66511526	0.83[EUR][1000 genomes]
rs66735346	0.83[EUR][1000 genomes]
rs66949767	0.83[EUR][1000 genomes]
rs67048620	0.83[EUR][1000 genomes]
rs6712798	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6721692	0.84[EUR][1000 genomes]
rs6729580	0.83[EUR][1000 genomes]
rs67335141	0.83[EUR][1000 genomes]
rs6733630	0.87[EUR][1000 genomes]
rs6739654	0.81[EUR][1000 genomes]
rs6746749	0.87[EUR][1000 genomes]
rs67517941	0.84[EUR][1000 genomes]
rs67557317	0.87[EUR][1000 genomes]
rs6761760	0.84[EUR][1000 genomes]
rs67780569	0.83[EUR][1000 genomes]
rs67957236	0.89[EUR][1000 genomes]
rs68039196	0.81[EUR][1000 genomes]
rs68051012	0.83[EUR][1000 genomes]
rs71446027	0.85[EUR][1000 genomes]
rs71446035	0.90[EUR][1000 genomes]
rs71446042	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72857279	0.80[EUR][1000 genomes]
rs72859088	0.83[EUR][1000 genomes]
rs72860906	0.84[EUR][1000 genomes]
rs72860941	0.86[EUR][1000 genomes]
rs72861000	0.87[EUR][1000 genomes]
rs7562388	0.87[EUR][1000 genomes]
rs7577579	0.83[EUR][1000 genomes]
rs7591270	0.83[EUR][1000 genomes]
rs7601038	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7607225	0.84[EUR][1000 genomes]
rs875167	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32275800-32287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:32283800-32286400	Weak transcription	HepG2	liver
3	chr2:32283800-32286400	Weak transcription	K562	blood
4	chr2:32283800-32287200	Weak transcription	A549	lung

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