Variant report

Variant	rs7587341
Chromosome Location	chr2:32256310-32256311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32246000..32248310-chr2:32255311..32257726,2	K562	blood:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:140)

rs_ID	r²[population]
rs1005460	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1011309	0.85[ASN][1000 genomes]
rs10153899	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10490358	0.83[ASN][1000 genomes]
rs10490359	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11124273	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11884169	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11890763	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11893435	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11897154	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11898765	0.84[EUR][1000 genomes]
rs11899296	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11901415	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11903729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12712325	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12988908	0.83[ASN][1000 genomes]
rs12990358	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12992916	0.84[EUR][1000 genomes]
rs12993413	0.87[EUR][1000 genomes]
rs12993808	0.93[EUR][1000 genomes]
rs12994708	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12994869	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12997171	0.83[ASN][1000 genomes]
rs13003695	0.82[ASN][1000 genomes]
rs13005816	0.87[EUR][1000 genomes]
rs13006751	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13007025	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13013099	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13018592	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13021718	0.84[ASN][1000 genomes]
rs13022518	0.84[EUR][1000 genomes]
rs13022696	0.82[ASN][1000 genomes]
rs13022719	0.80[EUR][1000 genomes]
rs13024535	0.82[EUR][1000 genomes]
rs13028676	0.87[EUR][1000 genomes]
rs13034714	0.85[EUR][1000 genomes]
rs13034933	0.81[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13409437	0.83[ASN][1000 genomes]
rs13414295	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs160802	0.83[ASN][1000 genomes]
rs17011641	0.81[EUR][1000 genomes]
rs17011644	0.82[ASN][1000 genomes]
rs17011673	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17011697	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011710	0.85[ASN][1000 genomes]
rs17011711	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011721	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011722	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17011740	0.88[EUR][1000 genomes]
rs17011742	0.96[EUR][1000 genomes]
rs17818002	0.83[ASN][1000 genomes]
rs1808112	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2064814	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs33998544	0.85[EUR][1000 genomes]
rs34056419	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34077616	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34231321	0.83[EUR][1000 genomes]
rs34316760	0.88[EUR][1000 genomes]
rs34321580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34369001	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34432107	0.84[EUR][1000 genomes]
rs34437462	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34457675	0.89[EUR][1000 genomes]
rs34460762	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34492168	0.88[EUR][1000 genomes]
rs34497289	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34540872	0.85[ASN][1000 genomes]
rs34569213	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34617455	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34645083	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34738692	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34776070	0.84[EUR][1000 genomes]
rs34805211	0.81[EUR][1000 genomes]
rs34897620	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34970173	0.83[ASN][1000 genomes]
rs34973007	0.81[EUR][1000 genomes]
rs35178826	0.84[ASN][1000 genomes]
rs35179884	0.88[EUR][1000 genomes]
rs35262968	0.88[EUR][1000 genomes]
rs35382589	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35397112	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35404750	0.88[EUR][1000 genomes]
rs35502701	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35514510	0.83[ASN][1000 genomes]
rs36048738	0.94[EUR][1000 genomes]
rs3754837	0.83[ASN][1000 genomes]
rs3769607	0.86[EUR][1000 genomes]
rs3769614	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3795922	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56821465	0.88[EUR][1000 genomes]
rs60954094	0.97[AFR][1000 genomes]
rs62142074	0.82[ASN][1000 genomes]
rs62142076	0.84[ASN][1000 genomes]
rs6543643	0.83[ASN][1000 genomes]
rs6543644	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66511526	0.81[EUR][1000 genomes]
rs66522244	0.84[ASN][1000 genomes]
rs66735346	0.83[ASN][1000 genomes]
rs66863308	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66949767	0.81[EUR][1000 genomes]
rs67048620	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6718407	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6721692	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6729580	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67335141	0.83[EUR][1000 genomes]
rs6733630	0.88[EUR][1000 genomes]
rs6736930	0.87[EUR][1000 genomes]
rs6739654	0.83[ASN][1000 genomes]
rs6746749	0.88[EUR][1000 genomes]
rs67493880	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67517941	0.84[EUR][1000 genomes]
rs67550529	0.81[ASN][1000 genomes]
rs67557317	0.88[EUR][1000 genomes]
rs6755740	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6761878	0.87[EUR][1000 genomes]
rs67780569	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67957236	0.86[EUR][1000 genomes]
rs68039196	0.86[ASN][1000 genomes]
rs68051012	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68076008	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71446026	0.84[ASN][1000 genomes]
rs71446027	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71446035	0.85[EUR][1000 genomes]
rs72859088	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72860906	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72860941	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72860982	0.89[EUR][1000 genomes]
rs72861000	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7559329	0.85[ASN][1000 genomes]
rs7560472	0.86[EUR][1000 genomes]
rs7560714	0.86[EUR][1000 genomes]
rs7562388	0.88[EUR][1000 genomes]
rs7574910	0.94[EUR][1000 genomes]
rs7577579	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7591270	0.83[ASN][1000 genomes]
rs7598154	0.95[EUR][1000 genomes]
rs7601038	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7607030	0.94[EUR][1000 genomes]
rs7607225	0.82[EUR][1000 genomes]
rs875167	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32236400-32264200	Weak transcription	Gastric	stomach
2	chr2:32236600-32261000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:32236600-32263200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:32236600-32263800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:32236600-32263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:32236600-32263800	Weak transcription	Psoas Muscle	Psoas
7	chr2:32236600-32264200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:32236600-32264200	Weak transcription	Right Atrium	heart
9	chr2:32236600-32264200	Weak transcription	Right Ventricle	heart
10	chr2:32236800-32258800	Weak transcription	Fetal Kidney	kidney
11	chr2:32236800-32263000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr2:32236800-32263800	Weak transcription	Small Intestine	intestine
13	chr2:32236800-32264000	Weak transcription	Brain Angular Gyrus	brain
14	chr2:32236800-32264000	Weak transcription	Fetal Heart	heart
15	chr2:32236800-32264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr2:32236800-32264000	Weak transcription	HSMMtube	muscle
17	chr2:32237000-32259600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr2:32237000-32262000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:32237000-32263600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr2:32237000-32263800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr2:32237000-32263800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr2:32237400-32264000	Weak transcription	GM12878-XiMat	blood
23	chr2:32238800-32258800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:32240800-32260200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:32243400-32259200	Weak transcription	Hela-S3	cervix
26	chr2:32244600-32263600	Weak transcription	NHEK	skin
27	chr2:32245600-32264200	Weak transcription	Aorta	Aorta
28	chr2:32246000-32263200	Weak transcription	Pancreas	Pancrea
29	chr2:32248400-32258800	Weak transcription	Brain Anterior Caudate	brain
30	chr2:32248600-32263800	Weak transcription	Brain Hippocampus Middle	brain
31	chr2:32248800-32259000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr2:32248800-32259400	Weak transcription	Ovary	ovary
33	chr2:32248800-32264000	Weak transcription	Rectal Smooth Muscle	rectum
34	chr2:32249200-32258800	Weak transcription	Brain Substantia Nigra	brain
35	chr2:32249200-32263400	Weak transcription	Fetal Brain Male	brain
36	chr2:32249200-32263800	Weak transcription	NHLF	lung
37	chr2:32249400-32258800	Weak transcription	Primary T cells from cord blood	blood
38	chr2:32249800-32258800	Weak transcription	HMEC	breast
39	chr2:32249800-32263800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr2:32249800-32263800	Weak transcription	Colon Smooth Muscle	Colon
41	chr2:32249800-32264000	Weak transcription	NHDF-Ad	bronchial
42	chr2:32250000-32258800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr2:32250000-32258800	Weak transcription	K562	blood
44	chr2:32250400-32259400	Weak transcription	Fetal Lung	lung
45	chr2:32250400-32264000	Weak transcription	A549	lung
46	chr2:32251200-32258800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:32251600-32264000	Weak transcription	Colonic Mucosa	Colon
48	chr2:32251800-32259000	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr2:32251800-32259000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr2:32251800-32259200	Weak transcription	NH-A	brain

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