Variant report

Variant	rs11688433
Chromosome Location	chr2:209359378-209359379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209356910..209360822-chr2:209361905..209365197,3	MCF-7	breast:
2	chr2:209352014..209353938-chr2:209359053..209361009,2	K562	blood:

Variant related genes	Relation type
ENSG00000144407	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10175430	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1057392	0.81[ASN][1000 genomes]
rs10932262	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682951	0.84[ASN][1000 genomes]
rs11696050	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12105866	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370374	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2014411	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061013	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364127	0.81[ASN][1000 genomes]
rs34242215	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36089579	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3820900	0.81[ASN][1000 genomes]
rs3820904	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4675768	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4675770	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4675772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7575183	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7604108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879707	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209355200-209361000	Weak transcription	Stomach Mucosa	stomach
2	chr2:209355200-209366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:209356600-209361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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