Variant report

Variant	rs2364127
Chromosome Location	chr2:209359560-209359561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209356910..209360822-chr2:209361905..209365197,3	MCF-7	breast:
2	chr2:209352014..209353938-chr2:209359053..209361009,2	K562	blood:

Variant related genes	Relation type
ENSG00000144407	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10202607	0.82[JPT][hapmap]
rs1057392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10932262	0.81[ASN][1000 genomes]
rs11688433	0.81[ASN][1000 genomes]
rs12105866	0.81[ASN][1000 genomes]
rs1259698	0.80[ASN][1000 genomes]
rs12617462	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs1370376	0.85[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap]
rs1377907	0.87[JPT][hapmap]
rs1437418	0.86[JPT][hapmap]
rs1816613	0.87[JPT][hapmap]
rs2059963	0.87[JPT][hapmap]
rs2061013	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs2364126	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2364128	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2576810	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2924790	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34242215	0.81[EUR][1000 genomes]
rs34845288	0.83[ASN][1000 genomes]
rs3769516	0.87[JPT][hapmap]
rs3769517	0.86[JPT][hapmap]
rs3820900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3820902	0.86[JPT][hapmap]
rs3820904	0.83[EUR][1000 genomes]
rs4627502	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap]
rs4675769	0.87[JPT][hapmap]
rs4675770	0.87[JPT][hapmap]
rs4675772	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs6435464	0.86[JPT][hapmap]
rs6726003	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs6754577	0.80[ASN][1000 genomes]
rs6755377	0.86[JPT][hapmap]
rs879707	0.81[JPT][hapmap]
rs897082	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs897083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs897084	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209355200-209361000	Weak transcription	Stomach Mucosa	stomach
2	chr2:209355200-209366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:209356600-209361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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