Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:209379373-209379700	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209378473..209380625-chr2:209381842..209384609,2	K562	blood:
2	chr2:209373259..209376239-chr2:209378226..209380019,3	K562	blood:

Variant related genes	Relation type
ENSG00000232409	TF binding region

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10202607	0.82[JPT][hapmap]
rs1057392	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12617462	0.91[CHB][hapmap]
rs1370376	1.00[CEU][hapmap];0.89[CHB][hapmap]
rs1377907	0.87[JPT][hapmap]
rs1429884	0.83[EUR][1000 genomes]
rs1437418	0.86[JPT][hapmap]
rs1816613	0.87[JPT][hapmap]
rs2059963	0.87[JPT][hapmap]
rs2061013	0.87[JPT][hapmap]
rs2364126	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2364127	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2576810	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2924790	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3769516	0.87[JPT][hapmap]
rs3769517	0.86[JPT][hapmap]
rs3820900	0.86[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3820902	0.86[JPT][hapmap]
rs4627502	1.00[CEU][hapmap];0.91[CHB][hapmap]
rs4675769	0.87[JPT][hapmap]
rs4675770	0.87[JPT][hapmap]
rs4675772	0.86[JPT][hapmap]
rs6435464	0.86[JPT][hapmap]
rs6726003	0.87[JPT][hapmap]
rs6755377	0.86[JPT][hapmap]
rs879707	0.81[JPT][hapmap]
rs897082	0.87[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap]
rs897083	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs897084	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961004	chr2:209375664-209393273	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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