Variant report

Variant	rs12617462
Chromosome Location	chr2:209286233-209286234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1057392	0.91[CHB][hapmap]
rs12478635	0.84[JPT][hapmap];1.00[YRI][hapmap]
rs1370376	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2364126	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs2364127	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs2364128	0.91[CHB][hapmap]
rs2576810	0.91[CHB][hapmap];1.00[YRI][hapmap]
rs2924790	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs3820900	0.91[CHB][hapmap]
rs4627502	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs897082	0.91[CHB][hapmap]
rs897083	0.91[CHB][hapmap]
rs897084	0.82[CHB][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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