Variant report

Variant	rs4627502
Chromosome Location	chr2:209312638-209312639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1057392	0.87[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs12478635	0.93[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12617462	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1370376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2364126	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs2364127	0.87[CEU][hapmap];0.82[CHB][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs2364128	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2576810	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2924790	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3820900	0.86[CEU][hapmap];0.86[CHB][hapmap];0.92[EUR][1000 genomes]
rs897082	0.87[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs897083	0.87[CEU][hapmap];0.86[CHB][hapmap];0.91[EUR][1000 genomes]
rs897084	0.86[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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