Variant report

Variant	rs6755377
Chromosome Location	chr2:209378138-209378139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10175430	0.85[ASN][1000 genomes]
rs10202607	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs1057392	0.86[JPT][hapmap]
rs10932262	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11688433	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11696050	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11897897	0.80[YRI][hapmap]
rs12105866	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1370374	0.85[ASN][1000 genomes]
rs1377907	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1437418	0.84[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs1816613	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2014411	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2059963	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061013	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2364126	0.82[JPT][hapmap]
rs2364127	0.86[JPT][hapmap]
rs2364128	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs2576810	0.82[JPT][hapmap]
rs2924790	0.82[JPT][hapmap]
rs34242215	0.86[ASN][1000 genomes]
rs36089579	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3769516	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3769517	0.91[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap]
rs3820900	0.86[JPT][hapmap]
rs3820901	0.83[CHD][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs3820902	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs3820904	0.87[ASN][1000 genomes]
rs4675768	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4675769	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4675770	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4675772	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6435464	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6726003	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6754577	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7575183	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604108	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs879707	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs897082	0.82[JPT][hapmap]
rs897083	0.86[JPT][hapmap]
rs897084	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv961004	chr2:209375664-209393273	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6755377	ACADL	cis	cerebellum	SCAN
rs6755377	PLEKHM3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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