Variant report

Variant	rs4675772
Chromosome Location	chr2:209357454-209357455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209356910..209360822-chr2:209361905..209365197,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10175430	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10202607	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs1057392	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10932262	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682951	0.84[ASN][1000 genomes]
rs11688433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696050	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12105866	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370374	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1377907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1437418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1816613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2014411	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2059963	0.82[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2061013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2364126	0.81[JPT][hapmap]
rs2364127	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs2364128	0.86[JPT][hapmap]
rs2576810	0.80[JPT][hapmap]
rs2924790	0.80[JPT][hapmap]
rs34242215	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs36089579	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769516	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3769517	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3820900	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs3820901	0.94[CEU][hapmap]
rs3820902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3820904	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4675768	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4675769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4675770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6435464	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6726003	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6755377	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7575183	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7604108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs879707	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs897082	0.80[JPT][hapmap]
rs897083	0.84[JPT][hapmap]
rs897084	0.89[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209354600-209357600	Weak transcription	Pancreas	Pancrea
2	chr2:209355200-209361000	Weak transcription	Stomach Mucosa	stomach
3	chr2:209355200-209366000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr2:209356600-209361000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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