Variant report

Variant	rs3820901
Chromosome Location	chr2:209350308-209350309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:209346701..209348280-chr2:209350259..209352368,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10175430	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10202607	0.85[CEU][hapmap]
rs10497900	0.91[CHB][hapmap];0.90[CHD][hapmap]
rs10932262	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11682951	0.88[ASN][1000 genomes]
rs11688433	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11696050	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12105866	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12694110	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs13016936	0.81[YRI][hapmap]
rs13403425	0.81[YRI][hapmap]
rs1370372	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1370374	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1377907	0.95[CEU][hapmap]
rs1437418	0.95[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap]
rs1816613	0.95[CEU][hapmap]
rs2014411	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2061013	0.95[CEU][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34242215	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36089579	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3769516	0.95[CEU][hapmap]
rs3769517	0.81[ASW][hapmap];0.85[CEU][hapmap];0.89[CHD][hapmap];0.83[LWK][hapmap];0.81[MEX][hapmap];0.84[MKK][hapmap];0.91[TSI][hapmap];0.81[YRI][hapmap]
rs3820902	0.88[ASW][hapmap];0.95[CEU][hapmap];0.88[CHD][hapmap];0.98[GIH][hapmap];0.90[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap]
rs3820904	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4673402	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs4675768	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4675769	0.94[CEU][hapmap]
rs4675770	0.95[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4675772	0.94[CEU][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6435464	0.83[CHD][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap]
rs6726003	0.95[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6728530	0.86[CHB][hapmap];0.86[CHD][hapmap]
rs6754577	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6755377	0.83[CHD][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap]
rs7575183	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7604108	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs879707	0.95[CEU][hapmap];0.89[CHD][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs897083	0.80[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3820901	PLEKHM3	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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