Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr2:209353404-209354292	K562	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
2	RCOR1	chr2:209353400-209354747	K562	blood:	n/a	n/a
3	ZNF384	chr2:209353502-209354352	K562	blood:	n/a	n/a
4	JUND	chr2:209353454-209354422	K562	blood:	n/a	chr2:209354108-209354122
5	TAL1	chr2:209353484-209354707	K562	blood:	n/a	n/a
6	GATA1	chr2:209353349-209354856	K562	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
7	GATA1	chr2:209353361-209354612	PBDE	blood:	n/a	chr2:209354123-209354130 chr2:209354116-209354137 chr2:209354112-209354129 chr2:209354121-209354130 chr2:209354121-209354131
8	POLR2A	chr2:209353501-209354650	K562	blood:	n/a	n/a

Variant related genes	Relation type
PTH2R	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10175430	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1057392	0.80[ASN][1000 genomes]
rs10932262	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11682951	0.85[ASN][1000 genomes]
rs11688433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11696050	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12105866	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1370374	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2014411	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2061013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2364127	0.80[ASN][1000 genomes]
rs34242215	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs36089579	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3820900	0.80[ASN][1000 genomes]
rs3820904	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4675768	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4675770	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4675772	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6726003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7575183	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7604108	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs879707	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:209352800-209354000	Enhancers	Brain Hippocampus Middle	brain
2	chr2:209353200-209353600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:209353200-209353600	Enhancers	K562	blood
4	chr2:209353200-209356600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:209353400-209353600	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:209353400-209353600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:209353400-209353600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr2:209353400-209354000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr2:209353400-209354600	Enhancers	Pancreas	Pancrea
10	chr2:209353400-209355000	Enhancers	Fetal Intestine Large	intestine

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