Variant report

Variant	rs11688672
Chromosome Location	chr2:21349480-21349481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:21348742..21351585-chr2:21351799..21353530,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11124434	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11682662	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11683495	0.93[EUR][1000 genomes]
rs11690364	0.80[EUR][1000 genomes]
rs12470574	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12471982	0.82[ASN][1000 genomes]
rs12477767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12619256	0.85[EUR][1000 genomes]
rs12997825	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13003754	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13010526	0.84[EUR][1000 genomes]
rs13019377	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13022408	0.91[EUR][1000 genomes]
rs1400713	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1914457	0.80[EUR][1000 genomes]
rs2030195	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2048933	0.83[EUR][1000 genomes]
rs2048934	0.83[EUR][1000 genomes]
rs312945	0.82[ASN][1000 genomes]
rs312974	0.82[ASN][1000 genomes]
rs312976	0.82[ASN][1000 genomes]
rs34054060	0.94[EUR][1000 genomes]
rs34144010	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34464539	0.87[EUR][1000 genomes]
rs35112647	0.93[EUR][1000 genomes]
rs35168234	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35750610	0.85[EUR][1000 genomes]
rs4387830	0.82[EUR][1000 genomes]
rs4574146	0.85[EUR][1000 genomes]
rs6749313	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7557098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7567650	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs97458	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21349400-21350000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links