Variant report

Variant	rs13019377
Chromosome Location	chr2:21319301-21319302
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-APOB-2	chr2:21319226-21319427	XLOC_002012
2	lnc-AC010872.2.1-1	chr2:21319248-21319427	XLOC_001387
3	lnc-AC010872.2.1-1	chr2:21318785-21319683	NONHSAT069479
4	lnc-APOB-2	chr2:21319226-21319473	NONHSAT069480

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11124434	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11682662	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11683495	0.87[EUR][1000 genomes]
rs11688672	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12470574	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12471982	0.86[ASN][1000 genomes]
rs12477767	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12618519	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12997825	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13003754	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13022408	0.86[EUR][1000 genomes]
rs1400713	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2030195	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs312945	0.92[ASN][1000 genomes]
rs312974	0.86[ASN][1000 genomes]
rs312976	0.86[ASN][1000 genomes]
rs34054060	0.88[EUR][1000 genomes]
rs34144010	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34464539	0.82[EUR][1000 genomes]
rs35112647	0.87[EUR][1000 genomes]
rs35168234	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35750610	0.91[EUR][1000 genomes]
rs6749313	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7557098	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7567650	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs97458	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21312800-21321000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:21315800-21320000	Enhancers	HepG2	liver
3	chr2:21315800-21326400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:21316000-21319400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr2:21317600-21320000	Active TSS	Liver	Liver
6	chr2:21318200-21319600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:21318200-21322800	Enhancers	Fetal Intestine Large	intestine
8	chr2:21318200-21323600	Enhancers	Fetal Intestine Small	intestine
9	chr2:21318400-21322400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:21318800-21319400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:21319200-21319400	Enhancers	Adipose Nuclei	Adipose

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