Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11124434	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11682662	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11683495	0.85[EUR][1000 genomes]
rs11688672	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11690364	0.93[EUR][1000 genomes]
rs12470574	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12477767	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12618519	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12619256	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12997825	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13003754	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13010526	0.97[EUR][1000 genomes]
rs13019377	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13022408	0.87[EUR][1000 genomes]
rs1400713	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1914457	0.93[EUR][1000 genomes]
rs2030195	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2048933	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2048934	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34054060	0.87[EUR][1000 genomes]
rs34144010	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34464539	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35112647	0.80[EUR][1000 genomes]
rs4387830	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4574146	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6749313	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7557098	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7567650	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv12838	chr2:21414273-21415132	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21413400-21419400	Weak transcription	Fetal Brain Male	brain
2	chr2:21415000-21415200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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